Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12341 | 5' | -53.2 | NC_003324.1 | + | 19323 | 1.11 | 0.001147 |
Target: 5'- cUCAAGCAGGCCGAAGAACUGGACGACa -3' miRNA: 3'- -AGUUCGUCCGGCUUCUUGACCUGCUG- -5' |
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12341 | 5' | -53.2 | NC_003324.1 | + | 18591 | 0.7 | 0.596443 |
Target: 5'- uUUAGGCGGGCCau----CUGGugGGCg -3' miRNA: 3'- -AGUUCGUCCGGcuucuuGACCugCUG- -5' |
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12341 | 5' | -53.2 | NC_003324.1 | + | 17635 | 0.67 | 0.75097 |
Target: 5'- cCGAGCucGGGcCCGAGGAuaucGACGACg -3' miRNA: 3'- aGUUCG--UCC-GGCUUCUugacCUGCUG- -5' |
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12341 | 5' | -53.2 | NC_003324.1 | + | 17099 | 0.66 | 0.795998 |
Target: 5'- aUCAAgacGCGGGCC-AAGAACgcagcgaaacgugaGGAUGGCg -3' miRNA: 3'- -AGUU---CGUCCGGcUUCUUGa-------------CCUGCUG- -5' |
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12341 | 5' | -53.2 | NC_003324.1 | + | 16439 | 0.7 | 0.596443 |
Target: 5'- gCGAGCAGGUC------CUGGACGACg -3' miRNA: 3'- aGUUCGUCCGGcuucuuGACCUGCUG- -5' |
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12341 | 5' | -53.2 | NC_003324.1 | + | 15470 | 0.69 | 0.652422 |
Target: 5'- -gAGGCcaAGGCCGAGGAuagcGACGACu -3' miRNA: 3'- agUUCG--UCCGGCUUCUugacCUGCUG- -5' |
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12341 | 5' | -53.2 | NC_003324.1 | + | 11589 | 0.66 | 0.792032 |
Target: 5'- ---cGCGGcuccuGCCGGAG-ACUGGuGCGACg -3' miRNA: 3'- aguuCGUC-----CGGCUUCuUGACC-UGCUG- -5' |
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12341 | 5' | -53.2 | NC_003324.1 | + | 7995 | 0.66 | 0.833983 |
Target: 5'- -uGAGCGGGCCGgcGAACagaaaguuuccuccGGuCGAUg -3' miRNA: 3'- agUUCGUCCGGCuuCUUGa-------------CCuGCUG- -5' |
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12341 | 5' | -53.2 | NC_003324.1 | + | 6109 | 0.69 | 0.628894 |
Target: 5'- -aGAGCAugucgucGGCagGAGcGGACUGGGCGGCa -3' miRNA: 3'- agUUCGU-------CCGg-CUU-CUUGACCUGCUG- -5' |
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12341 | 5' | -53.2 | NC_003324.1 | + | 2730 | 0.66 | 0.820116 |
Target: 5'- -aGGGCaAGGUCGAugacguuuuGGGACUGGaucaacaGCGGCa -3' miRNA: 3'- agUUCG-UCCGGCU---------UCUUGACC-------UGCUG- -5' |
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12341 | 5' | -53.2 | NC_003324.1 | + | 170 | 0.68 | 0.73394 |
Target: 5'- uUCAGGCAaauggucagcucgacGGCCGGcgcauaAGAGCgUGGcuGCGGCa -3' miRNA: 3'- -AGUUCGU---------------CCGGCU------UCUUG-ACC--UGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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