miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12341 5' -53.2 NC_003324.1 + 42551 0.67 0.781996
Target:  5'- gCAAGCucaAGGUgaAAGAAUgGGACGACa -3'
miRNA:   3'- aGUUCG---UCCGgcUUCUUGaCCUGCUG- -5'
12341 5' -53.2 NC_003324.1 + 30491 0.66 0.791036
Target:  5'- cCGAGCAGGCCcucGGAaACUGcgccugcgaccguGGCGACc -3'
miRNA:   3'- aGUUCGUCCGGcu-UCU-UGAC-------------CUGCUG- -5'
12341 5' -53.2 NC_003324.1 + 11589 0.66 0.792032
Target:  5'- ---cGCGGcuccuGCCGGAG-ACUGGuGCGACg -3'
miRNA:   3'- aguuCGUC-----CGGCUUCuUGACC-UGCUG- -5'
12341 5' -53.2 NC_003324.1 + 17099 0.66 0.795998
Target:  5'- aUCAAgacGCGGGCC-AAGAACgcagcgaaacgugaGGAUGGCg -3'
miRNA:   3'- -AGUU---CGUCCGGcUUCUUGa-------------CCUGCUG- -5'
12341 5' -53.2 NC_003324.1 + 35455 0.66 0.801894
Target:  5'- cCGAGCAGGCUGcAGcAGCacaGGcCGACc -3'
miRNA:   3'- aGUUCGUCCGGCuUC-UUGa--CCuGCUG- -5'
12341 5' -53.2 NC_003324.1 + 32166 0.66 0.801894
Target:  5'- aCGAGCcgaggcgcagcgAGGCCGAAGAGCcauuUGACg -3'
miRNA:   3'- aGUUCG------------UCCGGCUUCUUGaccuGCUG- -5'
12341 5' -53.2 NC_003324.1 + 2730 0.66 0.820116
Target:  5'- -aGGGCaAGGUCGAugacguuuuGGGACUGGaucaacaGCGGCa -3'
miRNA:   3'- agUUCG-UCCGGCU---------UCUUGACC-------UGCUG- -5'
12341 5' -53.2 NC_003324.1 + 34856 0.66 0.821055
Target:  5'- aUCGAGCAGGCCcuugacgauuuGAAGGAUcagcGGACc-- -3'
miRNA:   3'- -AGUUCGUCCGG-----------CUUCUUGa---CCUGcug -5'
12341 5' -53.2 NC_003324.1 + 39784 0.66 0.830332
Target:  5'- ---cGCAGGCCGGGcacaUGGcGCGACg -3'
miRNA:   3'- aguuCGUCCGGCUUcuugACC-UGCUG- -5'
12341 5' -53.2 NC_003324.1 + 49347 0.66 0.830332
Target:  5'- ---cGCAGG-CGAGGAuCUGGACacgaaGACg -3'
miRNA:   3'- aguuCGUCCgGCUUCUuGACCUG-----CUG- -5'
12341 5' -53.2 NC_003324.1 + 7995 0.66 0.833983
Target:  5'- -uGAGCGGGCCGgcGAACagaaaguuuccuccGGuCGAUg -3'
miRNA:   3'- agUUCGUCCGGCuuCUUGa-------------CCuGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.