miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12341 5' -53.2 NC_003324.1 + 39751 0.69 0.652422
Target:  5'- aUCAAGCAcgauGUCGAGGAAgaGGGCGcGCu -3'
miRNA:   3'- -AGUUCGUc---CGGCUUCUUgaCCUGC-UG- -5'
12341 5' -53.2 NC_003324.1 + 55033 0.69 0.652422
Target:  5'- cCGGGCAGGCaaggCGGAcGGCUGGgcugccGCGACg -3'
miRNA:   3'- aGUUCGUCCG----GCUUcUUGACC------UGCUG- -5'
12341 5' -53.2 NC_003324.1 + 6109 0.69 0.628894
Target:  5'- -aGAGCAugucgucGGCagGAGcGGACUGGGCGGCa -3'
miRNA:   3'- agUUCGU-------CCGg-CUU-CUUGACCUGCUG- -5'
12341 5' -53.2 NC_003324.1 + 29876 0.69 0.627773
Target:  5'- aUCAGGCAGGgUGGAuacggcgcgaucuucGGcgcgcugcuggccauGCUGGACGGCg -3'
miRNA:   3'- -AGUUCGUCCgGCUU---------------CU---------------UGACCUGCUG- -5'
12341 5' -53.2 NC_003324.1 + 28523 0.69 0.618809
Target:  5'- --cGGCAacGGCUGggGAACgacaGACGACa -3'
miRNA:   3'- aguUCGU--CCGGCuuCUUGac--CUGCUG- -5'
12341 5' -53.2 NC_003324.1 + 16439 0.7 0.596443
Target:  5'- gCGAGCAGGUC------CUGGACGACg -3'
miRNA:   3'- aGUUCGUCCGGcuucuuGACCUGCUG- -5'
12341 5' -53.2 NC_003324.1 + 18591 0.7 0.596443
Target:  5'- uUUAGGCGGGCCau----CUGGugGGCg -3'
miRNA:   3'- -AGUUCGUCCGGcuucuuGACCugCUG- -5'
12341 5' -53.2 NC_003324.1 + 49355 0.7 0.585302
Target:  5'- cCAacAGCGGuGUCGAcGAuCUGGGCGACc -3'
miRNA:   3'- aGU--UCGUC-CGGCUuCUuGACCUGCUG- -5'
12341 5' -53.2 NC_003324.1 + 21762 0.71 0.552158
Target:  5'- cUCu-GCAGGgCGAGGAACUcguccGGCGACa -3'
miRNA:   3'- -AGuuCGUCCgGCUUCUUGAc----CUGCUG- -5'
12341 5' -53.2 NC_003324.1 + 30801 0.73 0.417592
Target:  5'- gCAGGC-GGCCGAcgccaAGAAUUGGugGgACa -3'
miRNA:   3'- aGUUCGuCCGGCU-----UCUUGACCugC-UG- -5'
12341 5' -53.2 NC_003324.1 + 19323 1.11 0.001147
Target:  5'- cUCAAGCAGGCCGAAGAACUGGACGACa -3'
miRNA:   3'- -AGUUCGUCCGGCUUCUUGACCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.