miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12342 5' -54.2 NC_003324.1 + 49082 0.66 0.761417
Target:  5'- -cCGGGGCCGAaa-GCGGCGUCUAuuucGCu -3'
miRNA:   3'- cuGUUCCGGUUccgCGUCGUAGAU----CG- -5'
12342 5' -54.2 NC_003324.1 + 368 0.66 0.750886
Target:  5'- gGACAGGGUCucaGCGCGGCG-C-GGCu -3'
miRNA:   3'- -CUGUUCCGGuucCGCGUCGUaGaUCG- -5'
12342 5' -54.2 NC_003324.1 + 12938 0.66 0.74023
Target:  5'- -uCAAGGCgCuuGAGGCGCuGCAggaagAGCg -3'
miRNA:   3'- cuGUUCCG-G--UUCCGCGuCGUaga--UCG- -5'
12342 5' -54.2 NC_003324.1 + 50427 0.66 0.729459
Target:  5'- cGCAAGGCgCugggcguGGUGCAGC-UCgcagGGCu -3'
miRNA:   3'- cUGUUCCG-Guu-----CCGCGUCGuAGa---UCG- -5'
12342 5' -54.2 NC_003324.1 + 37138 0.66 0.729459
Target:  5'- gGAUucGGCCAAGGU-UGGCGUC-GGCu -3'
miRNA:   3'- -CUGuuCCGGUUCCGcGUCGUAGaUCG- -5'
12342 5' -54.2 NC_003324.1 + 21101 0.66 0.728376
Target:  5'- cGACAAGcCCAAggauuucGGCGCGGcCAUCauuGCg -3'
miRNA:   3'- -CUGUUCcGGUU-------CCGCGUC-GUAGau-CG- -5'
12342 5' -54.2 NC_003324.1 + 57171 0.66 0.718587
Target:  5'- uGCGAGGgCGAGGC-CAGCcUUgcGCa -3'
miRNA:   3'- cUGUUCCgGUUCCGcGUCGuAGauCG- -5'
12342 5' -54.2 NC_003324.1 + 15958 0.66 0.718587
Target:  5'- cGACAAGGCgGGGGCGuUGGCGaCgauaagauGCg -3'
miRNA:   3'- -CUGUUCCGgUUCCGC-GUCGUaGau------CG- -5'
12342 5' -54.2 NC_003324.1 + 26727 0.66 0.717494
Target:  5'- aGCAGGGCgcGGGCcuuuucuGCAGCAUCUuccGUg -3'
miRNA:   3'- cUGUUCCGguUCCG-------CGUCGUAGAu--CG- -5'
12342 5' -54.2 NC_003324.1 + 5983 0.66 0.707624
Target:  5'- cGACugucGGGCCAucaAGGCGCAGgcCGUCa--- -3'
miRNA:   3'- -CUGu---UCCGGU---UCCGCGUC--GUAGaucg -5'
12342 5' -54.2 NC_003324.1 + 21116 0.67 0.696585
Target:  5'- cACGucGGGCUGGcgcuuGCGCAGCAUCUcGGCc -3'
miRNA:   3'- cUGU--UCCGGUUc----CGCGUCGUAGA-UCG- -5'
12342 5' -54.2 NC_003324.1 + 49419 0.67 0.696585
Target:  5'- cGGCGAGcCCGGcagcGGCGCuuGGCugAUCUGGCa -3'
miRNA:   3'- -CUGUUCcGGUU----CCGCG--UCG--UAGAUCG- -5'
12342 5' -54.2 NC_003324.1 + 29186 0.67 0.695477
Target:  5'- --gAAGGUUAugccggcAGaGCGCaAGCGUCUGGCu -3'
miRNA:   3'- cugUUCCGGU-------UC-CGCG-UCGUAGAUCG- -5'
12342 5' -54.2 NC_003324.1 + 42279 0.67 0.695477
Target:  5'- aGCGuuGGGCCGAucacuccGGCGCAGUgccGUCguucGGCa -3'
miRNA:   3'- cUGU--UCCGGUU-------CCGCGUCG---UAGa---UCG- -5'
12342 5' -54.2 NC_003324.1 + 30421 0.67 0.68548
Target:  5'- cGAUuGGGCCAGcugcucGCGCGGgAUCUGcGCa -3'
miRNA:   3'- -CUGuUCCGGUUc-----CGCGUCgUAGAU-CG- -5'
12342 5' -54.2 NC_003324.1 + 10705 0.67 0.68548
Target:  5'- cGACAcGGaGCCAcGGC-CAGCGUUgGGCg -3'
miRNA:   3'- -CUGU-UC-CGGUuCCGcGUCGUAGaUCG- -5'
12342 5' -54.2 NC_003324.1 + 30109 0.67 0.68548
Target:  5'- cGGCAuGGGUgGuguugguGGCGCAGCAUCgcGUc -3'
miRNA:   3'- -CUGU-UCCGgUu------CCGCGUCGUAGauCG- -5'
12342 5' -54.2 NC_003324.1 + 7545 0.67 0.68548
Target:  5'- cGACGaaGGGCCAgcaAGGCGCAcGCcUCcGGa -3'
miRNA:   3'- -CUGU--UCCGGU---UCCGCGU-CGuAGaUCg -5'
12342 5' -54.2 NC_003324.1 + 22011 0.67 0.674322
Target:  5'- cGACGAGGCgCAugucGaGCGCAGCcUUgcGCg -3'
miRNA:   3'- -CUGUUCCG-GUu---C-CGCGUCGuAGauCG- -5'
12342 5' -54.2 NC_003324.1 + 44301 0.67 0.674322
Target:  5'- cGACGaaccGGGCgCGGuGGCGCGGCcgaUAGCc -3'
miRNA:   3'- -CUGU----UCCG-GUU-CCGCGUCGuagAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.