miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12342 5' -54.2 NC_003324.1 + 57372 0.7 0.517455
Target:  5'- aGGCGAGGgCGGcacgaccGGCGUugAGCAUCUgAGCg -3'
miRNA:   3'- -CUGUUCCgGUU-------CCGCG--UCGUAGA-UCG- -5'
12342 5' -54.2 NC_003324.1 + 57171 0.66 0.718587
Target:  5'- uGCGAGGgCGAGGC-CAGCcUUgcGCa -3'
miRNA:   3'- cUGUUCCgGUUCCGcGUCGuAGauCG- -5'
12342 5' -54.2 NC_003324.1 + 57019 0.68 0.640643
Target:  5'- uGGCGAGGCCcgaAAGGCgGguGgAUCUAcgacGCu -3'
miRNA:   3'- -CUGUUCCGG---UUCCG-CguCgUAGAU----CG- -5'
12342 5' -54.2 NC_003324.1 + 51721 0.69 0.550107
Target:  5'- aGCGAGGCCGacgcaaucgccgaGGGCGCcaAGCAguauUCgAGCu -3'
miRNA:   3'- cUGUUCCGGU-------------UCCGCG--UCGU----AGaUCG- -5'
12342 5' -54.2 NC_003324.1 + 51571 0.69 0.584483
Target:  5'- cGCAAGGgUAAGGCGCcuucGGUAUUcccgAGCa -3'
miRNA:   3'- cUGUUCCgGUUCCGCG----UCGUAGa---UCG- -5'
12342 5' -54.2 NC_003324.1 + 50427 0.66 0.729459
Target:  5'- cGCAAGGCgCugggcguGGUGCAGC-UCgcagGGCu -3'
miRNA:   3'- cUGUUCCG-Guu-----CCGCGUCGuAGa---UCG- -5'
12342 5' -54.2 NC_003324.1 + 49470 0.7 0.473125
Target:  5'- cGACGAGgacuauGCCAAGGUGCcgguccgcaacgagGGCGgcauUCUGGCa -3'
miRNA:   3'- -CUGUUC------CGGUUCCGCG--------------UCGU----AGAUCG- -5'
12342 5' -54.2 NC_003324.1 + 49419 0.67 0.696585
Target:  5'- cGGCGAGcCCGGcagcGGCGCuuGGCugAUCUGGCa -3'
miRNA:   3'- -CUGUUCcGGUU----CCGCG--UCG--UAGAUCG- -5'
12342 5' -54.2 NC_003324.1 + 49082 0.66 0.761417
Target:  5'- -cCGGGGCCGAaa-GCGGCGUCUAuuucGCu -3'
miRNA:   3'- cuGUUCCGGUUccgCGUCGUAGAU----CG- -5'
12342 5' -54.2 NC_003324.1 + 48577 0.74 0.2883
Target:  5'- uGAUGAGGgCAAGGacaGCGGCGUCgcAGCg -3'
miRNA:   3'- -CUGUUCCgGUUCCg--CGUCGUAGa-UCG- -5'
12342 5' -54.2 NC_003324.1 + 48406 0.69 0.540239
Target:  5'- aGACAAGaGCCAcccccucGCGCAGCuUCUuGCg -3'
miRNA:   3'- -CUGUUC-CGGUuc-----CGCGUCGuAGAuCG- -5'
12342 5' -54.2 NC_003324.1 + 47983 0.7 0.486651
Target:  5'- gGAUAAgccGGCCAucGGCGCAGCAcgguUC-GGCa -3'
miRNA:   3'- -CUGUU---CCGGUu-CCGCGUCGU----AGaUCG- -5'
12342 5' -54.2 NC_003324.1 + 47094 0.74 0.303414
Target:  5'- cGACAcGuGCggCGAGGUGCGGCAagUCUGGCg -3'
miRNA:   3'- -CUGUuC-CG--GUUCCGCGUCGU--AGAUCG- -5'
12342 5' -54.2 NC_003324.1 + 45195 0.67 0.667606
Target:  5'- cGGCAGcGGUCGAgagccugaacaagauGGCGCGGUccaaaGUCUGGUg -3'
miRNA:   3'- -CUGUU-CCGGUU---------------CCGCGUCG-----UAGAUCG- -5'
12342 5' -54.2 NC_003324.1 + 44816 0.71 0.465921
Target:  5'- uGCGGGGagaAGGGgGCGGCGUCauUGGCg -3'
miRNA:   3'- cUGUUCCgg-UUCCgCGUCGUAG--AUCG- -5'
12342 5' -54.2 NC_003324.1 + 44301 0.67 0.674322
Target:  5'- cGACGaaccGGGCgCGGuGGCGCGGCcgaUAGCc -3'
miRNA:   3'- -CUGU----UCCG-GUU-CCGCGUCGuagAUCG- -5'
12342 5' -54.2 NC_003324.1 + 42662 0.67 0.674322
Target:  5'- aGCAAGGCCAuucgccGGGCcaccaggacCGGCAaccgCUGGCg -3'
miRNA:   3'- cUGUUCCGGU------UCCGc--------GUCGUa---GAUCG- -5'
12342 5' -54.2 NC_003324.1 + 42279 0.67 0.695477
Target:  5'- aGCGuuGGGCCGAucacuccGGCGCAGUgccGUCguucGGCa -3'
miRNA:   3'- cUGU--UCCGGUU-------CCGCGUCG---UAGa---UCG- -5'
12342 5' -54.2 NC_003324.1 + 37138 0.66 0.729459
Target:  5'- gGAUucGGCCAAGGU-UGGCGUC-GGCu -3'
miRNA:   3'- -CUGuuCCGGUUCCGcGUCGUAGaUCG- -5'
12342 5' -54.2 NC_003324.1 + 35723 0.71 0.455729
Target:  5'- --gGAGGCCGAGGCcaaacaGCAGCAgaugaugCUGcGCg -3'
miRNA:   3'- cugUUCCGGUUCCG------CGUCGUa------GAU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.