Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12342 | 5' | -54.2 | NC_003324.1 | + | 49470 | 0.7 | 0.473125 |
Target: 5'- cGACGAGgacuauGCCAAGGUGCcgguccgcaacgagGGCGgcauUCUGGCa -3' miRNA: 3'- -CUGUUC------CGGUUCCGCG--------------UCGU----AGAUCG- -5' |
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12342 | 5' | -54.2 | NC_003324.1 | + | 48406 | 0.69 | 0.540239 |
Target: 5'- aGACAAGaGCCAcccccucGCGCAGCuUCUuGCg -3' miRNA: 3'- -CUGUUC-CGGUuc-----CGCGUCGuAGAuCG- -5' |
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12342 | 5' | -54.2 | NC_003324.1 | + | 51721 | 0.69 | 0.550107 |
Target: 5'- aGCGAGGCCGacgcaaucgccgaGGGCGCcaAGCAguauUCgAGCu -3' miRNA: 3'- cUGUUCCGGU-------------UCCGCG--UCGU----AGaUCG- -5' |
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12342 | 5' | -54.2 | NC_003324.1 | + | 51571 | 0.69 | 0.584483 |
Target: 5'- cGCAAGGgUAAGGCGCcuucGGUAUUcccgAGCa -3' miRNA: 3'- cUGUUCCgGUUCCGCG----UCGUAGa---UCG- -5' |
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12342 | 5' | -54.2 | NC_003324.1 | + | 21450 | 0.69 | 0.540239 |
Target: 5'- cGAuCGAGGCUAAGGCcCGGUucAUCcAGCa -3' miRNA: 3'- -CU-GUUCCGGUUCCGcGUCG--UAGaUCG- -5' |
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12342 | 5' | -54.2 | NC_003324.1 | + | 18378 | 0.69 | 0.540239 |
Target: 5'- -cCAAGGCCGGGGCaGCGauugcccgcGCGUC-GGCc -3' miRNA: 3'- cuGUUCCGGUUCCG-CGU---------CGUAGaUCG- -5' |
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12342 | 5' | -54.2 | NC_003324.1 | + | 29647 | 0.69 | 0.551208 |
Target: 5'- cGACGAGGCCuuGAGGCcGCuugagccccguGCAUCUGa- -3' miRNA: 3'- -CUGUUCCGG--UUCCG-CGu----------CGUAGAUcg -5' |
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12342 | 5' | -54.2 | NC_003324.1 | + | 29467 | 0.69 | 0.584483 |
Target: 5'- uGACAcGGCCGccuggcugcGGGCGCGucgggcGCAUCUcGGUa -3' miRNA: 3'- -CUGUuCCGGU---------UCCGCGU------CGUAGA-UCG- -5' |
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12342 | 5' | -54.2 | NC_003324.1 | + | 14693 | 0.68 | 0.59567 |
Target: 5'- gGGCAGGGCuucCAAGGUGCGauGCAg--GGCu -3' miRNA: 3'- -CUGUUCCG---GUUCCGCGU--CGUagaUCG- -5' |
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12342 | 5' | -54.2 | NC_003324.1 | + | 14589 | 0.68 | 0.606889 |
Target: 5'- cGCAAgcGGCCGGcGGCGCAgGCGg-UAGCg -3' miRNA: 3'- cUGUU--CCGGUU-CCGCGU-CGUagAUCG- -5' |
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12342 | 5' | -54.2 | NC_003324.1 | + | 14519 | 0.68 | 0.618131 |
Target: 5'- cGGCAGGGCguccgcgaCAAGGCGCuGGCG-CUcaaGGCc -3' miRNA: 3'- -CUGUUCCG--------GUUCCGCG-UCGUaGA---UCG- -5' |
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12342 | 5' | -54.2 | NC_003324.1 | + | 32958 | 0.68 | 0.629386 |
Target: 5'- cGugAAGGUCAc-GCGCuGCAUCU-GCu -3' miRNA: 3'- -CugUUCCGGUucCGCGuCGUAGAuCG- -5' |
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12342 | 5' | -54.2 | NC_003324.1 | + | 2198 | 0.68 | 0.638392 |
Target: 5'- cACGGGGCCGAGGaaaaaccucaAGCAagUAGCg -3' miRNA: 3'- cUGUUCCGGUUCCgcg-------UCGUagAUCG- -5' |
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12342 | 5' | -54.2 | NC_003324.1 | + | 57019 | 0.68 | 0.640643 |
Target: 5'- uGGCGAGGCCcgaAAGGCgGguGgAUCUAcgacGCu -3' miRNA: 3'- -CUGUUCCGG---UUCCG-CguCgUAGAU----CG- -5' |
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12342 | 5' | -54.2 | NC_003324.1 | + | 22345 | 0.68 | 0.618131 |
Target: 5'- cGACGAcaUCAAGGCGCAGC-UCgccGCg -3' miRNA: 3'- -CUGUUccGGUUCCGCGUCGuAGau-CG- -5' |
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12342 | 5' | -54.2 | NC_003324.1 | + | 32299 | 0.68 | 0.605766 |
Target: 5'- cGACAAcGGCCucugcgcGGCGCcGCAUCUccggauccugcauGGCc -3' miRNA: 3'- -CUGUU-CCGGuu-----CCGCGuCGUAGA-------------UCG- -5' |
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12342 | 5' | -54.2 | NC_003324.1 | + | 2081 | 0.67 | 0.663122 |
Target: 5'- gGACAAGGUCgAAGGUGCAuauaaccguGCGg--AGCa -3' miRNA: 3'- -CUGUUCCGG-UUCCGCGU---------CGUagaUCG- -5' |
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12342 | 5' | -54.2 | NC_003324.1 | + | 49419 | 0.67 | 0.696585 |
Target: 5'- cGGCGAGcCCGGcagcGGCGCuuGGCugAUCUGGCa -3' miRNA: 3'- -CUGUUCcGGUU----CCGCG--UCG--UAGAUCG- -5' |
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12342 | 5' | -54.2 | NC_003324.1 | + | 21116 | 0.67 | 0.696585 |
Target: 5'- cACGucGGGCUGGcgcuuGCGCAGCAUCUcGGCc -3' miRNA: 3'- cUGU--UCCGGUUc----CGCGUCGUAGA-UCG- -5' |
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12342 | 5' | -54.2 | NC_003324.1 | + | 30421 | 0.67 | 0.68548 |
Target: 5'- cGAUuGGGCCAGcugcucGCGCGGgAUCUGcGCa -3' miRNA: 3'- -CUGuUCCGGUUc-----CGCGUCgUAGAU-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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