Results 1 - 20 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12343 | 5' | -54.8 | NC_003324.1 | + | 3049 | 0.67 | 0.699747 |
Target: 5'- cGCAAGCcgaaUGGCUGACCUugaaCAGUCCcuaGCu -3' miRNA: 3'- cCGUUUG----ACUGACUGGAc---GUCGGG---CG- -5' |
|||||||
12343 | 5' | -54.8 | NC_003324.1 | + | 7420 | 0.71 | 0.462647 |
Target: 5'- gGGCAcggaGAUUGGCaaggGugCUGCuGCCCGa -3' miRNA: 3'- -CCGU----UUGACUGa---CugGACGuCGGGCg -5' |
|||||||
12343 | 5' | -54.8 | NC_003324.1 | + | 8514 | 0.74 | 0.295937 |
Target: 5'- cGCAAAUccGcCUGcACCUGCAGCCgGCg -3' miRNA: 3'- cCGUUUGa-CuGAC-UGGACGUCGGgCG- -5' |
|||||||
12343 | 5' | -54.8 | NC_003324.1 | + | 10070 | 0.68 | 0.611711 |
Target: 5'- uGGCGuuGCUGGCuUGGuCCaUGCuuGGCUCGCg -3' miRNA: 3'- -CCGUu-UGACUG-ACU-GG-ACG--UCGGGCG- -5' |
|||||||
12343 | 5' | -54.8 | NC_003324.1 | + | 11437 | 0.77 | 0.211328 |
Target: 5'- cGGCAAACUGAUUGACaacauCAGCgaCCGCg -3' miRNA: 3'- -CCGUUUGACUGACUGgac--GUCG--GGCG- -5' |
|||||||
12343 | 5' | -54.8 | NC_003324.1 | + | 13001 | 0.69 | 0.534306 |
Target: 5'- cGC-GGCUGGC-GAUCUGCAgggcggcaucaacGCCCGCc -3' miRNA: 3'- cCGuUUGACUGaCUGGACGU-------------CGGGCG- -5' |
|||||||
12343 | 5' | -54.8 | NC_003324.1 | + | 14456 | 0.68 | 0.594077 |
Target: 5'- cGGCGcgUUGAUUGGCa-GCagccguggauacgucGGCCCGCg -3' miRNA: 3'- -CCGUuuGACUGACUGgaCG---------------UCGGGCG- -5' |
|||||||
12343 | 5' | -54.8 | NC_003324.1 | + | 16029 | 0.69 | 0.545039 |
Target: 5'- cGGCGGACUGGCUGgugaugagGCCaaguucgacgacuUGCcGgCCGCg -3' miRNA: 3'- -CCGUUUGACUGAC--------UGG-------------ACGuCgGGCG- -5' |
|||||||
12343 | 5' | -54.8 | NC_003324.1 | + | 16161 | 0.66 | 0.752962 |
Target: 5'- aGGCAucGCUGGC--ACCgagGCGGgCaCCGCa -3' miRNA: 3'- -CCGUu-UGACUGacUGGa--CGUC-G-GGCG- -5' |
|||||||
12343 | 5' | -54.8 | NC_003324.1 | + | 18444 | 0.69 | 0.583096 |
Target: 5'- uGGUGAACaUGACgcagacgaucaugcuUGGCCUGCcaauccucggcGCCCGCu -3' miRNA: 3'- -CCGUUUG-ACUG---------------ACUGGACGu----------CGGGCG- -5' |
|||||||
12343 | 5' | -54.8 | NC_003324.1 | + | 19710 | 1.15 | 0.000418 |
Target: 5'- cGGCAAACUGACUGACCUGCAGCCCGCg -3' miRNA: 3'- -CCGUUUGACUGACUGGACGUCGGGCG- -5' |
|||||||
12343 | 5' | -54.8 | NC_003324.1 | + | 20581 | 0.69 | 0.556925 |
Target: 5'- uGGCGAGCggGAUccgGugCUGUGGCgCCGUc -3' miRNA: 3'- -CCGUUUGa-CUGa--CugGACGUCG-GGCG- -5' |
|||||||
12343 | 5' | -54.8 | NC_003324.1 | + | 20609 | 0.67 | 0.699747 |
Target: 5'- cGGC--GCUGAUgggcGCUUGCGGUCgGCg -3' miRNA: 3'- -CCGuuUGACUGac--UGGACGUCGGgCG- -5' |
|||||||
12343 | 5' | -54.8 | NC_003324.1 | + | 21067 | 0.66 | 0.752962 |
Target: 5'- cGGCAAAC--GCUGcCUUGuCGGCcgCCGCg -3' miRNA: 3'- -CCGUUUGacUGACuGGAC-GUCG--GGCG- -5' |
|||||||
12343 | 5' | -54.8 | NC_003324.1 | + | 22596 | 0.68 | 0.58968 |
Target: 5'- cGGCGGccuuUUGGCUG-CCUGCcgcguugccgAGCcCCGCg -3' miRNA: 3'- -CCGUUu---GACUGACuGGACG----------UCG-GGCG- -5' |
|||||||
12343 | 5' | -54.8 | NC_003324.1 | + | 26797 | 0.68 | 0.632708 |
Target: 5'- uGGCAGACgcggccgugcgcuUGGCUGGCUuugGCGccGCuCCGCu -3' miRNA: 3'- -CCGUUUG-------------ACUGACUGGa--CGU--CG-GGCG- -5' |
|||||||
12343 | 5' | -54.8 | NC_003324.1 | + | 28718 | 0.69 | 0.556925 |
Target: 5'- gGGCAGGCgccGAaacCUGcUCUGCAGuuCCCGCg -3' miRNA: 3'- -CCGUUUGa--CU---GACuGGACGUC--GGGCG- -5' |
|||||||
12343 | 5' | -54.8 | NC_003324.1 | + | 28727 | 0.69 | 0.567793 |
Target: 5'- uGGCAccAC-GACgcgcGACaagGCGGCCCGCa -3' miRNA: 3'- -CCGUu-UGaCUGa---CUGga-CGUCGGGCG- -5' |
|||||||
12343 | 5' | -54.8 | NC_003324.1 | + | 29175 | 0.66 | 0.763279 |
Target: 5'- cGGCAGAgcgcaagcguCUGGCUGACgaGUucggcguGUCCGUc -3' miRNA: 3'- -CCGUUU----------GACUGACUGgaCGu------CGGGCG- -5' |
|||||||
12343 | 5' | -54.8 | NC_003324.1 | + | 29244 | 0.69 | 0.566704 |
Target: 5'- cGGC-GGCUGuucgGGCCUGCaucgccgGGCUCGCg -3' miRNA: 3'- -CCGuUUGACuga-CUGGACG-------UCGGGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home