miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12343 5' -54.8 NC_003324.1 + 26797 0.68 0.632708
Target:  5'- uGGCAGACgcggccgugcgcuUGGCUGGCUuugGCGccGCuCCGCu -3'
miRNA:   3'- -CCGUUUG-------------ACUGACUGGa--CGU--CG-GGCG- -5'
12343 5' -54.8 NC_003324.1 + 10070 0.68 0.611711
Target:  5'- uGGCGuuGCUGGCuUGGuCCaUGCuuGGCUCGCg -3'
miRNA:   3'- -CCGUu-UGACUG-ACU-GG-ACG--UCGGGCG- -5'
12343 5' -54.8 NC_003324.1 + 52188 0.79 0.152551
Target:  5'- aGGCAAGCUGA-UGACCgGCAccGCCCGa -3'
miRNA:   3'- -CCGUUUGACUgACUGGaCGU--CGGGCg -5'
12343 5' -54.8 NC_003324.1 + 29905 0.68 0.609504
Target:  5'- cGGCGcGCUG-CUGGCCaugcuggacggcGCGGCCCa- -3'
miRNA:   3'- -CCGUuUGACuGACUGGa-----------CGUCGGGcg -5'
12343 5' -54.8 NC_003324.1 + 35554 0.7 0.482931
Target:  5'- uGCGAGCgGAuCUGcaagGCCUGC-GCCUGCg -3'
miRNA:   3'- cCGUUUGaCU-GAC----UGGACGuCGGGCG- -5'
12343 5' -54.8 NC_003324.1 + 54833 0.7 0.524711
Target:  5'- cGGCAGGgaGAUUG-CC-GCAGCCCu- -3'
miRNA:   3'- -CCGUUUgaCUGACuGGaCGUCGGGcg -5'
12343 5' -54.8 NC_003324.1 + 13001 0.69 0.534306
Target:  5'- cGC-GGCUGGC-GAUCUGCAgggcggcaucaacGCCCGCc -3'
miRNA:   3'- cCGuUUGACUGaCUGGACGU-------------CGGGCG- -5'
12343 5' -54.8 NC_003324.1 + 32886 0.7 0.468686
Target:  5'- aGGCucACUGACaccgucaaucuucGACCUGCGGuUCUGCa -3'
miRNA:   3'- -CCGuuUGACUGa------------CUGGACGUC-GGGCG- -5'
12343 5' -54.8 NC_003324.1 + 46576 0.68 0.611711
Target:  5'- aGGCucucgaacAACUGACUGACCggccugGCAGugaucaaacuuCCgGCa -3'
miRNA:   3'- -CCGu-------UUGACUGACUGGa-----CGUC-----------GGgCG- -5'
12343 5' -54.8 NC_003324.1 + 40856 0.68 0.622758
Target:  5'- cGguGAUUG-CUGAUCUGCc-CCCGCg -3'
miRNA:   3'- cCguUUGACuGACUGGACGucGGGCG- -5'
12343 5' -54.8 NC_003324.1 + 7420 0.71 0.462647
Target:  5'- gGGCAcggaGAUUGGCaaggGugCUGCuGCCCGa -3'
miRNA:   3'- -CCGU----UUGACUGa---CugGACGuCGGGCg -5'
12343 5' -54.8 NC_003324.1 + 42858 0.68 0.633813
Target:  5'- uGGUAuuCgaGGCUG-CCgGcCGGCCCGCg -3'
miRNA:   3'- -CCGUuuGa-CUGACuGGaC-GUCGGGCG- -5'
12343 5' -54.8 NC_003324.1 + 31144 0.67 0.704084
Target:  5'- uGGC--GCUG-CaGGCCUGCcucgcggagcugcccGGCCUGCg -3'
miRNA:   3'- -CCGuuUGACuGaCUGGACG---------------UCGGGCG- -5'
12343 5' -54.8 NC_003324.1 + 50212 0.66 0.710568
Target:  5'- cGGCGAGCcuugaaggcgUGACcuugaucgacaUGAUCgagGCgaaAGCCCGCg -3'
miRNA:   3'- -CCGUUUG----------ACUG-----------ACUGGa--CG---UCGGGCG- -5'
12343 5' -54.8 NC_003324.1 + 50020 0.66 0.742521
Target:  5'- cGGCAAgcGCUGgggccGCUGAUCgGCuccgguuuccGCCCGUa -3'
miRNA:   3'- -CCGUU--UGAC-----UGACUGGaCGu---------CGGGCG- -5'
12343 5' -54.8 NC_003324.1 + 55044 0.66 0.742521
Target:  5'- aGGCGGAC-GGCUGGgCUGCcGCgacggCGCa -3'
miRNA:   3'- -CCGUUUGaCUGACUgGACGuCGg----GCG- -5'
12343 5' -54.8 NC_003324.1 + 16161 0.66 0.752962
Target:  5'- aGGCAucGCUGGC--ACCgagGCGGgCaCCGCa -3'
miRNA:   3'- -CCGUu-UGACUGacUGGa--CGUC-G-GGCG- -5'
12343 5' -54.8 NC_003324.1 + 21067 0.66 0.752962
Target:  5'- cGGCAAAC--GCUGcCUUGuCGGCcgCCGCg -3'
miRNA:   3'- -CCGUUUGacUGACuGGAC-GUCG--GGCG- -5'
12343 5' -54.8 NC_003324.1 + 35372 0.66 0.763279
Target:  5'- cGGCcuguGCUG-CUGcaGCCUGCucggccGCCgCGCg -3'
miRNA:   3'- -CCGuu--UGACuGAC--UGGACGu-----CGG-GCG- -5'
12343 5' -54.8 NC_003324.1 + 51512 0.66 0.763279
Target:  5'- gGGCAGACgagGACgaacaUGGCCgGUGGCuuGg -3'
miRNA:   3'- -CCGUUUGa--CUG-----ACUGGaCGUCGggCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.