miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12343 5' -54.8 NC_003324.1 + 29175 0.66 0.763279
Target:  5'- cGGCAGAgcgcaagcguCUGGCUGACgaGUucggcguGUCCGUc -3'
miRNA:   3'- -CCGUUU----------GACUGACUGgaCGu------CGGGCG- -5'
12343 5' -54.8 NC_003324.1 + 28727 0.69 0.567793
Target:  5'- uGGCAccAC-GACgcgcGACaagGCGGCCCGCa -3'
miRNA:   3'- -CCGUu-UGaCUGa---CUGga-CGUCGGGCG- -5'
12343 5' -54.8 NC_003324.1 + 42626 0.68 0.600682
Target:  5'- cGGCAAGCacGACUGGCaaUGguGCCUuuGCc -3'
miRNA:   3'- -CCGUUUGa-CUGACUGg-ACguCGGG--CG- -5'
12343 5' -54.8 NC_003324.1 + 30361 0.68 0.611711
Target:  5'- cGGC-GGCUugGGC-GACCgUGCcuuGGCCCGCa -3'
miRNA:   3'- -CCGuUUGA--CUGaCUGG-ACG---UCGGGCG- -5'
12343 5' -54.8 NC_003324.1 + 47501 0.67 0.666929
Target:  5'- uGGCAGGCgucgaaGCUGugcuccGCCUGgcaGGCCUGCa -3'
miRNA:   3'- -CCGUUUGac----UGAC------UGGACg--UCGGGCG- -5'
12343 5' -54.8 NC_003324.1 + 20609 0.67 0.699747
Target:  5'- cGGC--GCUGAUgggcGCUUGCGGUCgGCg -3'
miRNA:   3'- -CCGuuUGACUGac--UGGACGUCGGgCG- -5'
12343 5' -54.8 NC_003324.1 + 48842 0.85 0.06113
Target:  5'- gGGCGAccuugagcgcuucGCUGA-UGGCCUGCAGCCUGCu -3'
miRNA:   3'- -CCGUU-------------UGACUgACUGGACGUCGGGCG- -5'
12343 5' -54.8 NC_003324.1 + 11437 0.77 0.211328
Target:  5'- cGGCAAACUGAUUGACaacauCAGCgaCCGCg -3'
miRNA:   3'- -CCGUUUGACUGACUGgac--GUCG--GGCG- -5'
12343 5' -54.8 NC_003324.1 + 31232 0.7 0.524711
Target:  5'- gGGCAGcuccGCgaGGCaGGCCUGCAGCgCCagGCg -3'
miRNA:   3'- -CCGUU----UGa-CUGaCUGGACGUCG-GG--CG- -5'
12343 5' -54.8 NC_003324.1 + 18444 0.69 0.583096
Target:  5'- uGGUGAACaUGACgcagacgaucaugcuUGGCCUGCcaauccucggcGCCCGCu -3'
miRNA:   3'- -CCGUUUG-ACUG---------------ACUGGACGu----------CGGGCG- -5'
12343 5' -54.8 NC_003324.1 + 46458 0.68 0.633813
Target:  5'- aGGguAGCuUGGCUGuauCCUGCuuaCCGCu -3'
miRNA:   3'- -CCguUUG-ACUGACu--GGACGucgGGCG- -5'
12343 5' -54.8 NC_003324.1 + 42487 0.66 0.752962
Target:  5'- uGGC--GCUGGC--GCUguUGCGGaCCCGCg -3'
miRNA:   3'- -CCGuuUGACUGacUGG--ACGUC-GGGCG- -5'
12343 5' -54.8 NC_003324.1 + 52323 0.7 0.524711
Target:  5'- cGGCAGGacgaACUGGCCgagUGaUAGCCCGCc -3'
miRNA:   3'- -CCGUUUgac-UGACUGG---AC-GUCGGGCG- -5'
12343 5' -54.8 NC_003324.1 + 41667 0.66 0.721312
Target:  5'- gGGCuuucccGAGCgaggGACggccACCUGCgaggaacaGGCCCGCg -3'
miRNA:   3'- -CCG------UUUGa---CUGac--UGGACG--------UCGGGCG- -5'
12343 5' -54.8 NC_003324.1 + 14456 0.68 0.594077
Target:  5'- cGGCGcgUUGAUUGGCa-GCagccguggauacgucGGCCCGCg -3'
miRNA:   3'- -CCGUuuGACUGACUGgaCG---------------UCGGGCG- -5'
12343 5' -54.8 NC_003324.1 + 8514 0.74 0.295937
Target:  5'- cGCAAAUccGcCUGcACCUGCAGCCgGCg -3'
miRNA:   3'- cCGUUUGa-CuGAC-UGGACGUCGGgCG- -5'
12343 5' -54.8 NC_003324.1 + 19710 1.15 0.000418
Target:  5'- cGGCAAACUGACUGACCUGCAGCCCGCg -3'
miRNA:   3'- -CCGUUUGACUGACUGGACGUCGGGCG- -5'
12343 5' -54.8 NC_003324.1 + 3049 0.67 0.699747
Target:  5'- cGCAAGCcgaaUGGCUGACCUugaaCAGUCCcuaGCu -3'
miRNA:   3'- cCGUUUG----ACUGACUGGAc---GUCGGG---CG- -5'
12343 5' -54.8 NC_003324.1 + 38966 0.69 0.535376
Target:  5'- aGGCugguAAgaGGCUGaaccGCCUGCAguaucGCCUGCa -3'
miRNA:   3'- -CCGu---UUgaCUGAC----UGGACGU-----CGGGCG- -5'
12343 5' -54.8 NC_003324.1 + 40856 0.68 0.622758
Target:  5'- cGguGAUUG-CUGAUCUGCc-CCCGCg -3'
miRNA:   3'- cCguUUGACuGACUGGACGucGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.