miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12343 5' -54.8 NC_003324.1 + 19710 1.15 0.000418
Target:  5'- cGGCAAACUGACUGACCUGCAGCCCGCg -3'
miRNA:   3'- -CCGUUUGACUGACUGGACGUCGGGCG- -5'
12343 5' -54.8 NC_003324.1 + 48842 0.85 0.06113
Target:  5'- gGGCGAccuugagcgcuucGCUGA-UGGCCUGCAGCCUGCu -3'
miRNA:   3'- -CCGUU-------------UGACUgACUGGACGUCGGGCG- -5'
12343 5' -54.8 NC_003324.1 + 52188 0.79 0.152551
Target:  5'- aGGCAAGCUGA-UGACCgGCAccGCCCGa -3'
miRNA:   3'- -CCGUUUGACUgACUGGaCGU--CGGGCg -5'
12343 5' -54.8 NC_003324.1 + 11437 0.77 0.211328
Target:  5'- cGGCAAACUGAUUGACaacauCAGCgaCCGCg -3'
miRNA:   3'- -CCGUUUGACUGACUGgac--GUCG--GGCG- -5'
12343 5' -54.8 NC_003324.1 + 8514 0.74 0.295937
Target:  5'- cGCAAAUccGcCUGcACCUGCAGCCgGCg -3'
miRNA:   3'- cCGUUUGa-CuGAC-UGGACGUCGGgCG- -5'
12343 5' -54.8 NC_003324.1 + 7420 0.71 0.462647
Target:  5'- gGGCAcggaGAUUGGCaaggGugCUGCuGCCCGa -3'
miRNA:   3'- -CCGU----UUGACUGa---CugGACGuCGGGCg -5'
12343 5' -54.8 NC_003324.1 + 32886 0.7 0.468686
Target:  5'- aGGCucACUGACaccgucaaucuucGACCUGCGGuUCUGCa -3'
miRNA:   3'- -CCGuuUGACUGa------------CUGGACGUC-GGGCG- -5'
12343 5' -54.8 NC_003324.1 + 35554 0.7 0.482931
Target:  5'- uGCGAGCgGAuCUGcaagGCCUGC-GCCUGCg -3'
miRNA:   3'- cCGUUUGaCU-GAC----UGGACGuCGGGCG- -5'
12343 5' -54.8 NC_003324.1 + 31232 0.7 0.524711
Target:  5'- gGGCAGcuccGCgaGGCaGGCCUGCAGCgCCagGCg -3'
miRNA:   3'- -CCGUU----UGa-CUGaCUGGACGUCG-GG--CG- -5'
12343 5' -54.8 NC_003324.1 + 52323 0.7 0.524711
Target:  5'- cGGCAGGacgaACUGGCCgagUGaUAGCCCGCc -3'
miRNA:   3'- -CCGUUUgac-UGACUGG---AC-GUCGGGCG- -5'
12343 5' -54.8 NC_003324.1 + 54833 0.7 0.524711
Target:  5'- cGGCAGGgaGAUUG-CC-GCAGCCCu- -3'
miRNA:   3'- -CCGUUUgaCUGACuGGaCGUCGGGcg -5'
12343 5' -54.8 NC_003324.1 + 13001 0.69 0.534306
Target:  5'- cGC-GGCUGGC-GAUCUGCAgggcggcaucaacGCCCGCc -3'
miRNA:   3'- cCGuUUGACUGaCUGGACGU-------------CGGGCG- -5'
12343 5' -54.8 NC_003324.1 + 38966 0.69 0.535376
Target:  5'- aGGCugguAAgaGGCUGaaccGCCUGCAguaucGCCUGCa -3'
miRNA:   3'- -CCGu---UUgaCUGAC----UGGACGU-----CGGGCG- -5'
12343 5' -54.8 NC_003324.1 + 16029 0.69 0.545039
Target:  5'- cGGCGGACUGGCUGgugaugagGCCaaguucgacgacuUGCcGgCCGCg -3'
miRNA:   3'- -CCGUUUGACUGAC--------UGG-------------ACGuCgGGCG- -5'
12343 5' -54.8 NC_003324.1 + 28718 0.69 0.556925
Target:  5'- gGGCAGGCgccGAaacCUGcUCUGCAGuuCCCGCg -3'
miRNA:   3'- -CCGUUUGa--CU---GACuGGACGUC--GGGCG- -5'
12343 5' -54.8 NC_003324.1 + 20581 0.69 0.556925
Target:  5'- uGGCGAGCggGAUccgGugCUGUGGCgCCGUc -3'
miRNA:   3'- -CCGUUUGa-CUGa--CugGACGUCG-GGCG- -5'
12343 5' -54.8 NC_003324.1 + 29244 0.69 0.566704
Target:  5'- cGGC-GGCUGuucgGGCCUGCaucgccgGGCUCGCg -3'
miRNA:   3'- -CCGuUUGACuga-CUGGACG-------UCGGGCG- -5'
12343 5' -54.8 NC_003324.1 + 28727 0.69 0.567793
Target:  5'- uGGCAccAC-GACgcgcGACaagGCGGCCCGCa -3'
miRNA:   3'- -CCGUu-UGaCUGa---CUGga-CGUCGGGCG- -5'
12343 5' -54.8 NC_003324.1 + 18444 0.69 0.583096
Target:  5'- uGGUGAACaUGACgcagacgaucaugcuUGGCCUGCcaauccucggcGCCCGCu -3'
miRNA:   3'- -CCGUUUG-ACUG---------------ACUGGACGu----------CGGGCG- -5'
12343 5' -54.8 NC_003324.1 + 22596 0.68 0.58968
Target:  5'- cGGCGGccuuUUGGCUG-CCUGCcgcguugccgAGCcCCGCg -3'
miRNA:   3'- -CCGUUu---GACUGACuGGACG----------UCG-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.