Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12343 | 5' | -54.8 | NC_003324.1 | + | 35372 | 0.66 | 0.763279 |
Target: 5'- cGGCcuguGCUG-CUGcaGCCUGCucggccGCCgCGCg -3' miRNA: 3'- -CCGuu--UGACuGAC--UGGACGu-----CGG-GCG- -5' |
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12343 | 5' | -54.8 | NC_003324.1 | + | 51512 | 0.66 | 0.763279 |
Target: 5'- gGGCAGACgagGACgaacaUGGCCgGUGGCuuGg -3' miRNA: 3'- -CCGUUUGa--CUG-----ACUGGaCGUCGggCg -5' |
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12343 | 5' | -54.8 | NC_003324.1 | + | 29175 | 0.66 | 0.763279 |
Target: 5'- cGGCAGAgcgcaagcguCUGGCUGACgaGUucggcguGUCCGUc -3' miRNA: 3'- -CCGUUU----------GACUGACUGgaCGu------CGGGCG- -5' |
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12343 | 5' | -54.8 | NC_003324.1 | + | 21067 | 0.66 | 0.752962 |
Target: 5'- cGGCAAAC--GCUGcCUUGuCGGCcgCCGCg -3' miRNA: 3'- -CCGUUUGacUGACuGGAC-GUCG--GGCG- -5' |
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12343 | 5' | -54.8 | NC_003324.1 | + | 16161 | 0.66 | 0.752962 |
Target: 5'- aGGCAucGCUGGC--ACCgagGCGGgCaCCGCa -3' miRNA: 3'- -CCGUu-UGACUGacUGGa--CGUC-G-GGCG- -5' |
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12343 | 5' | -54.8 | NC_003324.1 | + | 42487 | 0.66 | 0.752962 |
Target: 5'- uGGC--GCUGGC--GCUguUGCGGaCCCGCg -3' miRNA: 3'- -CCGuuUGACUGacUGG--ACGUC-GGGCG- -5' |
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12343 | 5' | -54.8 | NC_003324.1 | + | 55044 | 0.66 | 0.742521 |
Target: 5'- aGGCGGAC-GGCUGGgCUGCcGCgacggCGCa -3' miRNA: 3'- -CCGUUUGaCUGACUgGACGuCGg----GCG- -5' |
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12343 | 5' | -54.8 | NC_003324.1 | + | 50020 | 0.66 | 0.742521 |
Target: 5'- cGGCAAgcGCUGgggccGCUGAUCgGCuccgguuuccGCCCGUa -3' miRNA: 3'- -CCGUU--UGAC-----UGACUGGaCGu---------CGGGCG- -5' |
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12343 | 5' | -54.8 | NC_003324.1 | + | 41667 | 0.66 | 0.721312 |
Target: 5'- gGGCuuucccGAGCgaggGACggccACCUGCgaggaacaGGCCCGCg -3' miRNA: 3'- -CCG------UUUGa---CUGac--UGGACG--------UCGGGCG- -5' |
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12343 | 5' | -54.8 | NC_003324.1 | + | 50212 | 0.66 | 0.710568 |
Target: 5'- cGGCGAGCcuugaaggcgUGACcuugaucgacaUGAUCgagGCgaaAGCCCGCg -3' miRNA: 3'- -CCGUUUG----------ACUG-----------ACUGGa--CG---UCGGGCG- -5' |
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12343 | 5' | -54.8 | NC_003324.1 | + | 31144 | 0.67 | 0.704084 |
Target: 5'- uGGC--GCUG-CaGGCCUGCcucgcggagcugcccGGCCUGCg -3' miRNA: 3'- -CCGuuUGACuGaCUGGACG---------------UCGGGCG- -5' |
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12343 | 5' | -54.8 | NC_003324.1 | + | 3049 | 0.67 | 0.699747 |
Target: 5'- cGCAAGCcgaaUGGCUGACCUugaaCAGUCCcuaGCu -3' miRNA: 3'- cCGUUUG----ACUGACUGGAc---GUCGGG---CG- -5' |
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12343 | 5' | -54.8 | NC_003324.1 | + | 20609 | 0.67 | 0.699747 |
Target: 5'- cGGC--GCUGAUgggcGCUUGCGGUCgGCg -3' miRNA: 3'- -CCGuuUGACUGac--UGGACGUCGGgCG- -5' |
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12343 | 5' | -54.8 | NC_003324.1 | + | 47501 | 0.67 | 0.666929 |
Target: 5'- uGGCAGGCgucgaaGCUGugcuccGCCUGgcaGGCCUGCa -3' miRNA: 3'- -CCGUUUGac----UGAC------UGGACg--UCGGGCG- -5' |
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12343 | 5' | -54.8 | NC_003324.1 | + | 46458 | 0.68 | 0.633813 |
Target: 5'- aGGguAGCuUGGCUGuauCCUGCuuaCCGCu -3' miRNA: 3'- -CCguUUG-ACUGACu--GGACGucgGGCG- -5' |
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12343 | 5' | -54.8 | NC_003324.1 | + | 42858 | 0.68 | 0.633813 |
Target: 5'- uGGUAuuCgaGGCUG-CCgGcCGGCCCGCg -3' miRNA: 3'- -CCGUuuGa-CUGACuGGaC-GUCGGGCG- -5' |
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12343 | 5' | -54.8 | NC_003324.1 | + | 26797 | 0.68 | 0.632708 |
Target: 5'- uGGCAGACgcggccgugcgcuUGGCUGGCUuugGCGccGCuCCGCu -3' miRNA: 3'- -CCGUUUG-------------ACUGACUGGa--CGU--CG-GGCG- -5' |
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12343 | 5' | -54.8 | NC_003324.1 | + | 40856 | 0.68 | 0.622758 |
Target: 5'- cGguGAUUG-CUGAUCUGCc-CCCGCg -3' miRNA: 3'- cCguUUGACuGACUGGACGucGGGCG- -5' |
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12343 | 5' | -54.8 | NC_003324.1 | + | 30361 | 0.68 | 0.611711 |
Target: 5'- cGGC-GGCUugGGC-GACCgUGCcuuGGCCCGCa -3' miRNA: 3'- -CCGuUUGA--CUGaCUGG-ACG---UCGGGCG- -5' |
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12343 | 5' | -54.8 | NC_003324.1 | + | 10070 | 0.68 | 0.611711 |
Target: 5'- uGGCGuuGCUGGCuUGGuCCaUGCuuGGCUCGCg -3' miRNA: 3'- -CCGUu-UGACUG-ACU-GG-ACG--UCGGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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