miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12346 5' -59.3 NC_003324.1 + 30085 0.72 0.247275
Target:  5'- aGCAUCGCGUCGCCaGAgugcaccggcCGGGAUcgaugcGGaCCCg -3'
miRNA:   3'- -CGUAGCGCGGCGG-CU----------GCUCUA------CC-GGG- -5'
12346 5' -59.3 NC_003324.1 + 41728 0.91 0.011279
Target:  5'- aCGUCGCGCCGCCGACGAGAgcgGGCgagCCg -3'
miRNA:   3'- cGUAGCGCGGCGGCUGCUCUa--CCG---GG- -5'
12346 5' -59.3 NC_003324.1 + 8970 0.68 0.405233
Target:  5'- ---cCGC-CCGCUGugGGGAauuUGGCCg -3'
miRNA:   3'- cguaGCGcGGCGGCugCUCU---ACCGGg -5'
12346 5' -59.3 NC_003324.1 + 30138 0.72 0.24119
Target:  5'- gGUGUCGCGaCCGgCGGCGuGAUGGgCg -3'
miRNA:   3'- -CGUAGCGC-GGCgGCUGCuCUACCgGg -5'
12346 5' -59.3 NC_003324.1 + 8268 0.78 0.098619
Target:  5'- gGCG-CGCGCCGCCGGgcagugagcaGGGAcUGGCCCu -3'
miRNA:   3'- -CGUaGCGCGGCGGCUg---------CUCU-ACCGGG- -5'
12346 5' -59.3 NC_003324.1 + 22034 1.13 0.000241
Target:  5'- uGCAUCGCGCCGCCGACGAGAUGGCCCg -3'
miRNA:   3'- -CGUAGCGCGGCGGCUGCUCUACCGGG- -5'
12346 5' -59.3 NC_003324.1 + 40702 0.7 0.300596
Target:  5'- aGgAUCGCcCUGauCCGGCG-GAUGGCCCc -3'
miRNA:   3'- -CgUAGCGcGGC--GGCUGCuCUACCGGG- -5'
12346 5' -59.3 NC_003324.1 + 18690 0.75 0.143835
Target:  5'- uCGUCGCacauguuccacGCCGCCcACcAGAUGGCCCg -3'
miRNA:   3'- cGUAGCG-----------CGGCGGcUGcUCUACCGGG- -5'
12346 5' -59.3 NC_003324.1 + 30515 0.73 0.223681
Target:  5'- cGCAUUGCGCagaucCCGcGCGAGcagcUGGCCCa -3'
miRNA:   3'- -CGUAGCGCGgc---GGC-UGCUCu---ACCGGG- -5'
12346 5' -59.3 NC_003324.1 + 4531 0.67 0.470298
Target:  5'- -gAUCGaCGCCaCCGACaAGAUGaGCCg -3'
miRNA:   3'- cgUAGC-GCGGcGGCUGcUCUAC-CGGg -5'
12346 5' -59.3 NC_003324.1 + 31654 0.66 0.519869
Target:  5'- gGCG-CGCcggagaaguuGCCGCCGuuccaucCGAGAUcGGCCg -3'
miRNA:   3'- -CGUaGCG----------CGGCGGCu------GCUCUA-CCGGg -5'
12346 5' -59.3 NC_003324.1 + 49716 0.7 0.315243
Target:  5'- uUAUCcCGCUGCCcugcaGGCGGGAUGGUUCa -3'
miRNA:   3'- cGUAGcGCGGCGG-----CUGCUCUACCGGG- -5'
12346 5' -59.3 NC_003324.1 + 30057 0.66 0.540275
Target:  5'- cCAUCaCGCCGCCGGuCGcGAcaccGGCCg -3'
miRNA:   3'- cGUAGcGCGGCGGCU-GCuCUa---CCGGg -5'
12346 5' -59.3 NC_003324.1 + 17605 0.68 0.396408
Target:  5'- uGCcccggCGCGCCGuuGAgcacgaugccgcCGAGcucgGGCCCg -3'
miRNA:   3'- -CGua---GCGCGGCggCU------------GCUCua--CCGGG- -5'
12346 5' -59.3 NC_003324.1 + 20006 0.66 0.550581
Target:  5'- cCAUCagccagGUGuuGCUGugGAGcuccGUGGCCUg -3'
miRNA:   3'- cGUAG------CGCggCGGCugCUC----UACCGGG- -5'
12346 5' -59.3 NC_003324.1 + 50997 0.68 0.396408
Target:  5'- aGCcUCGacgagGCUcggacgaagGCCGACGAaAUGGCCCa -3'
miRNA:   3'- -CGuAGCg----CGG---------CGGCUGCUcUACCGGG- -5'
12346 5' -59.3 NC_003324.1 + 30480 0.67 0.480026
Target:  5'- -aAUCgGCGCCGCCGAgca---GGCCCu -3'
miRNA:   3'- cgUAG-CGCGGCGGCUgcucuaCCGGG- -5'
12346 5' -59.3 NC_003324.1 + 29643 0.66 0.540275
Target:  5'- cGCAaCGcCGCCGCCuGAgcCGGGAUcGaGUCCg -3'
miRNA:   3'- -CGUaGC-GCGGCGG-CU--GCUCUA-C-CGGG- -5'
12346 5' -59.3 NC_003324.1 + 3176 0.67 0.474177
Target:  5'- gGCAcCGCGCCGaugaaugggauugcuUUGAUGAGuggcaGGCCCu -3'
miRNA:   3'- -CGUaGCGCGGC---------------GGCUGCUCua---CCGGG- -5'
12346 5' -59.3 NC_003324.1 + 10643 0.67 0.451148
Target:  5'- cGUGUCGCuaCGaCUGGCGAGAccaUGGUCa -3'
miRNA:   3'- -CGUAGCGcgGC-GGCUGCUCU---ACCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.