miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12350 3' -52.8 NC_003324.1 + 56147 0.66 0.840267
Target:  5'- -cGCGGGuuCGCCaGCCuGGAAGCcgACGg -3'
miRNA:   3'- gaUGUUCu-GCGGcCGG-CCUUUGa-UGC- -5'
12350 3' -52.8 NC_003324.1 + 55040 0.69 0.710305
Target:  5'- -gGCAAGGCGgaCGGCUGG--GCUGCc -3'
miRNA:   3'- gaUGUUCUGCg-GCCGGCCuuUGAUGc -5'
12350 3' -52.8 NC_003324.1 + 52378 0.68 0.752888
Target:  5'- -cGC-AGACGCCGGCCGccccGAAUcggGCGg -3'
miRNA:   3'- gaUGuUCUGCGGCCGGCc---UUUGa--UGC- -5'
12350 3' -52.8 NC_003324.1 + 51517 0.69 0.721098
Target:  5'- -gACgAGGACGaacaUGGCCGGugGCUugGg -3'
miRNA:   3'- gaUG-UUCUGCg---GCCGGCCuuUGAugC- -5'
12350 3' -52.8 NC_003324.1 + 50427 0.69 0.710305
Target:  5'- -cGCAAGGCGCUGGgCGuGGugcagcucgcagGGCUGCGc -3'
miRNA:   3'- gaUGUUCUGCGGCCgGC-CU------------UUGAUGC- -5'
12350 3' -52.8 NC_003324.1 + 49873 0.67 0.793469
Target:  5'- -gGCAAGugaGCCGGCgGGcAAagaucGCUGCGu -3'
miRNA:   3'- gaUGUUCug-CGGCCGgCC-UU-----UGAUGC- -5'
12350 3' -52.8 NC_003324.1 + 46421 0.67 0.831313
Target:  5'- cCUGCAGuguuCGCCGGCCGaccuGCUAuCGg -3'
miRNA:   3'- -GAUGUUcu--GCGGCCGGCcuu-UGAU-GC- -5'
12350 3' -52.8 NC_003324.1 + 43366 0.74 0.40327
Target:  5'- cCUGCGAGGCGUCGGCgaaauccuUGaGAAACUGCc -3'
miRNA:   3'- -GAUGUUCUGCGGCCG--------GC-CUUUGAUGc -5'
12350 3' -52.8 NC_003324.1 + 42864 0.71 0.598831
Target:  5'- --uCGAGGCuGCCGGCCGGcccgcgaGGAuCUGCGa -3'
miRNA:   3'- gauGUUCUG-CGGCCGGCC-------UUU-GAUGC- -5'
12350 3' -52.8 NC_003324.1 + 42651 0.76 0.333378
Target:  5'- -aGCGAGGCuGCCGGCaCGGucAUUGCGg -3'
miRNA:   3'- gaUGUUCUG-CGGCCG-GCCuuUGAUGC- -5'
12350 3' -52.8 NC_003324.1 + 42634 0.67 0.822147
Target:  5'- -cGCGcGGCGCCGGgCGcGGAuCUGCa -3'
miRNA:   3'- gaUGUuCUGCGGCCgGC-CUUuGAUGc -5'
12350 3' -52.8 NC_003324.1 + 42273 0.74 0.441525
Target:  5'- cCUACAGGGCGCgGGUCGGcaacgcuGAgUGCGc -3'
miRNA:   3'- -GAUGUUCUGCGgCCGGCCu------UUgAUGC- -5'
12350 3' -52.8 NC_003324.1 + 36754 0.69 0.709222
Target:  5'- aUGCGAGgcccguggaGCGCUGGCCGGuguuuucGAGCUcCGg -3'
miRNA:   3'- gAUGUUC---------UGCGGCCGGCC-------UUUGAuGC- -5'
12350 3' -52.8 NC_003324.1 + 34565 0.74 0.441525
Target:  5'- -aACAAGACGCCGGCCaacaAGACgACGc -3'
miRNA:   3'- gaUGUUCUGCGGCCGGcc--UUUGaUGC- -5'
12350 3' -52.8 NC_003324.1 + 34453 0.67 0.831313
Target:  5'- -gGCAAG-CGUCGGCgGGAuuucgcgcuuCUGCGu -3'
miRNA:   3'- gaUGUUCuGCGGCCGgCCUuu--------GAUGC- -5'
12350 3' -52.8 NC_003324.1 + 32310 0.68 0.742401
Target:  5'- uCUGCGcGGCGCCGcaucuCCGGAucCUGCa -3'
miRNA:   3'- -GAUGUuCUGCGGCc----GGCCUuuGAUGc -5'
12350 3' -52.8 NC_003324.1 + 31248 0.66 0.873768
Target:  5'- cCUGau-GGCGCaGGCCGGGcAGCUccGCGa -3'
miRNA:   3'- -GAUguuCUGCGgCCGGCCU-UUGA--UGC- -5'
12350 3' -52.8 NC_003324.1 + 30601 0.68 0.763251
Target:  5'- -aGCgAGGAUGCCGcCCGGAAGC-AUGg -3'
miRNA:   3'- gaUG-UUCUGCGGCcGGCCUUUGaUGC- -5'
12350 3' -52.8 NC_003324.1 + 30470 0.67 0.812777
Target:  5'- uUGCGGGucgaaucgGCGCCgccgagcaGGCCcucGGAAACUGCGc -3'
miRNA:   3'- gAUGUUC--------UGCGG--------CCGG---CCUUUGAUGC- -5'
12350 3' -52.8 NC_003324.1 + 28821 0.7 0.655402
Target:  5'- aUGCGGaGCG-CGGCgCGGGAACUGCa -3'
miRNA:   3'- gAUGUUcUGCgGCCG-GCCUUUGAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.