miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12354 5' -57 NC_003324.1 + 19712 0.67 0.543155
Target:  5'- -cGCGGCAAacugacugaccuGCAGC-CCGCgCugCUCAa -3'
miRNA:   3'- gaUGCUGUU------------CGUCGcGGCG-GugGAGU- -5'
12354 5' -57 NC_003324.1 + 33047 0.67 0.543155
Target:  5'- -gACGGCGAGCAGaugcaGCgCGUgACCUUc -3'
miRNA:   3'- gaUGCUGUUCGUCg----CG-GCGgUGGAGu -5'
12354 5' -57 NC_003324.1 + 47928 0.7 0.393489
Target:  5'- gUACGGuuuCAgcGGCAGCGCCGCCucauaagGCgUCAg -3'
miRNA:   3'- gAUGCU---GU--UCGUCGCGGCGG-------UGgAGU- -5'
12354 5' -57 NC_003324.1 + 38434 0.75 0.195978
Target:  5'- -gACGGCGAcCAGCGCCGCCccggugcCCUCGu -3'
miRNA:   3'- gaUGCUGUUcGUCGCGGCGGu------GGAGU- -5'
12354 5' -57 NC_003324.1 + 50065 0.68 0.498116
Target:  5'- -gGCGAUcauugcccccaucaGGGCAGCGCCGaUCGCCa-- -3'
miRNA:   3'- gaUGCUG--------------UUCGUCGCGGC-GGUGGagu -5'
12354 5' -57 NC_003324.1 + 55133 0.68 0.460744
Target:  5'- uCUGCGcCGucgcGGCAGCccaGCCGuCCGCCUUg -3'
miRNA:   3'- -GAUGCuGU----UCGUCG---CGGC-GGUGGAGu -5'
12354 5' -57 NC_003324.1 + 31318 0.7 0.376599
Target:  5'- gUGCGGCcGGCGGCGCUGgCGCUggCGg -3'
miRNA:   3'- gAUGCUGuUCGUCGCGGCgGUGGa-GU- -5'
12354 5' -57 NC_003324.1 + 45942 0.67 0.543155
Target:  5'- -cACGGCcucgcaucAGGCGccccGCGCCGuuuCCACCUCAc -3'
miRNA:   3'- gaUGCUG--------UUCGU----CGCGGC---GGUGGAGU- -5'
12354 5' -57 NC_003324.1 + 35117 0.69 0.431562
Target:  5'- -gACGAuCAGGCcgcuGCuGCCGCCGCCg-- -3'
miRNA:   3'- gaUGCU-GUUCGu---CG-CGGCGGUGGagu -5'
12354 5' -57 NC_003324.1 + 20894 0.68 0.469701
Target:  5'- -aACGGCGAuGC-GCGucaccaacacgguCCGCCGCCUCGc -3'
miRNA:   3'- gaUGCUGUU-CGuCGC-------------GGCGGUGGAGU- -5'
12354 5' -57 NC_003324.1 + 34395 0.68 0.480769
Target:  5'- -gACGACAAGC-GCGaaCGCUACCUg- -3'
miRNA:   3'- gaUGCUGUUCGuCGCg-GCGGUGGAgu -5'
12354 5' -57 NC_003324.1 + 6184 0.69 0.431562
Target:  5'- aUGCGAgAGGCAGCccuuGCUGCgACCgUCGa -3'
miRNA:   3'- gAUGCUgUUCGUCG----CGGCGgUGG-AGU- -5'
12354 5' -57 NC_003324.1 + 53922 0.72 0.281616
Target:  5'- -cGCGGCAAGU-GCGCuuCGCCGCCUgCAg -3'
miRNA:   3'- gaUGCUGUUCGuCGCG--GCGGUGGA-GU- -5'
12354 5' -57 NC_003324.1 + 42288 0.66 0.607971
Target:  5'- --uCGGCAAcGCugaguGCGCCGCCugC-CAc -3'
miRNA:   3'- gauGCUGUU-CGu----CGCGGCGGugGaGU- -5'
12354 5' -57 NC_003324.1 + 1457 0.71 0.350944
Target:  5'- -cGCGACGuauccGGCAGCGgauuuCCGCCAUCUUc -3'
miRNA:   3'- gaUGCUGU-----UCGUCGC-----GGCGGUGGAGu -5'
12354 5' -57 NC_003324.1 + 53610 0.66 0.607971
Target:  5'- aCU-CGACGAGCuGCGCgacgaacguCGCCGgCUCc -3'
miRNA:   3'- -GAuGCUGUUCGuCGCG---------GCGGUgGAGu -5'
12354 5' -57 NC_003324.1 + 37487 0.66 0.618896
Target:  5'- -gGCGACuGGUAGCGCuucuugcgcaCGCUACCa-- -3'
miRNA:   3'- gaUGCUGuUCGUCGCG----------GCGGUGGagu -5'
12354 5' -57 NC_003324.1 + 20580 0.68 0.484824
Target:  5'- --cUGGCGAGCgggauccggugcuguGGCGCCGUCGCCa-- -3'
miRNA:   3'- gauGCUGUUCG---------------UCGCGGCGGUGGagu -5'
12354 5' -57 NC_003324.1 + 34397 0.68 0.480769
Target:  5'- ---aGAUAGGCGaacuCGCCGCCGuCCUCGg -3'
miRNA:   3'- gaugCUGUUCGUc---GCGGCGGU-GGAGU- -5'
12354 5' -57 NC_003324.1 + 41554 0.69 0.422077
Target:  5'- -aACGAC-AGCGGCGCgGgCCuguuCCUCGc -3'
miRNA:   3'- gaUGCUGuUCGUCGCGgC-GGu---GGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.