miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12355 5' -52.8 NC_003324.1 + 38119 0.66 0.872514
Target:  5'- cGCCGucucguGUCGgUCGgCGGAauguuGACGCGCc -3'
miRNA:   3'- aCGGCu-----UAGCaGGUgGUCU-----UUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 23843 0.68 0.751135
Target:  5'- cGCCGAAUCGgaccCCGauuuCCGGcgcAACGuCGCa -3'
miRNA:   3'- aCGGCUUAGCa---GGU----GGUCu--UUGC-GCG- -5'
12355 5' -52.8 NC_003324.1 + 55018 0.68 0.727856
Target:  5'- gUGCUGGAUgagcagcUGUUCAggcauggUCAGGAACGCGCc -3'
miRNA:   3'- -ACGGCUUA-------GCAGGU-------GGUCUUUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 25400 1.13 0.001082
Target:  5'- cUGCCGAAUCGUCCACCAGAAACGCGCa -3'
miRNA:   3'- -ACGGCUUAGCAGGUGGUCUUUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 27951 0.66 0.864457
Target:  5'- gGCCGGcuaCG-CCAgCGaggacGAAGCGCGCg -3'
miRNA:   3'- aCGGCUua-GCaGGUgGU-----CUUUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 47780 0.66 0.864457
Target:  5'- aGCau-GUCGUCgaggagGCCGcGAAGCGCGCc -3'
miRNA:   3'- aCGgcuUAGCAGg-----UGGU-CUUUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 34701 0.66 0.856153
Target:  5'- cGCCGAGgugCGcaaaCugCAGA-GCGCGUc -3'
miRNA:   3'- aCGGCUUa--GCag--GugGUCUuUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 15201 0.66 0.853614
Target:  5'- cGCCGuGUCGa-CGCCgAGAccgauggcauccauGACGCGCu -3'
miRNA:   3'- aCGGCuUAGCagGUGG-UCU--------------UUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 23469 0.66 0.838836
Target:  5'- aGCCGAGcgCGUCaaagCGGAGugGCGa -3'
miRNA:   3'- aCGGCUUa-GCAGgug-GUCUUugCGCg -5'
12355 5' -52.8 NC_003324.1 + 1529 0.68 0.762558
Target:  5'- cGCCGGAUaCGUCgCGCCGuuuccuuugcguCGCGCu -3'
miRNA:   3'- aCGGCUUA-GCAG-GUGGUcuuu--------GCGCG- -5'
12355 5' -52.8 NC_003324.1 + 35504 0.67 0.811225
Target:  5'- aGCCGggUuCGUCUcccgcaccgaggGCgAGGAaaccAUGCGCg -3'
miRNA:   3'- aCGGCuuA-GCAGG------------UGgUCUU----UGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 6216 0.66 0.838836
Target:  5'- gGCgCGggUCaGUCCGCUAucGGCguagGCGCg -3'
miRNA:   3'- aCG-GCuuAG-CAGGUGGUcuUUG----CGCG- -5'
12355 5' -52.8 NC_003324.1 + 2755 0.66 0.872514
Target:  5'- uUGCCGAAgCGgCCACCgcgcuGGAAGgGCa- -3'
miRNA:   3'- -ACGGCUUaGCaGGUGG-----UCUUUgCGcg -5'
12355 5' -52.8 NC_003324.1 + 32343 0.67 0.810273
Target:  5'- cUGgCGAG-CGUCCcgacacgACCGGggGCGCu- -3'
miRNA:   3'- -ACgGCUUaGCAGG-------UGGUCuuUGCGcg -5'
12355 5' -52.8 NC_003324.1 + 12603 0.66 0.872514
Target:  5'- cGUCGccUCGaacugCCACCAGcccgucguuGGACGCGUa -3'
miRNA:   3'- aCGGCuuAGCa----GGUGGUC---------UUUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 22563 0.66 0.847609
Target:  5'- gGCCGAAaUGUUCA-CGGucAUGCGCu -3'
miRNA:   3'- aCGGCUUaGCAGGUgGUCuuUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 18889 0.67 0.781892
Target:  5'- cGCCGAccuUCGcCgCGCCAuGGAccCGCGCa -3'
miRNA:   3'- aCGGCUu--AGCaG-GUGGU-CUUu-GCGCG- -5'
12355 5' -52.8 NC_003324.1 + 40148 0.68 0.729994
Target:  5'- cGCCG---CGUUCcgGCCAGAccCGCGCa -3'
miRNA:   3'- aCGGCuuaGCAGG--UGGUCUuuGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 19864 0.66 0.864457
Target:  5'- cUGUCGu-UCGUCCagaaaaugccGCCGGggGaCGCGa -3'
miRNA:   3'- -ACGGCuuAGCAGG----------UGGUCuuU-GCGCg -5'
12355 5' -52.8 NC_003324.1 + 25941 0.66 0.856153
Target:  5'- gGUCGAucgcgAUCGcUCCACC----ACGCGCc -3'
miRNA:   3'- aCGGCU-----UAGC-AGGUGGucuuUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.