Results 41 - 60 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12358 | 3' | -57.3 | NC_003324.1 | + | 45332 | 0.69 | 0.474085 |
Target: 5'- -aGCGCUGGUCAac-CGGUGGCGCg- -3' miRNA: 3'- ggCGUGGCCGGUguuGCCAUUGCGgc -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 9946 | 0.69 | 0.474085 |
Target: 5'- cUCGUAUCcGCCACAccccgcccaaaACGGUuccuGCGCCGc -3' miRNA: 3'- -GGCGUGGcCGGUGU-----------UGCCAu---UGCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 24146 | 0.69 | 0.474085 |
Target: 5'- gCGCACCGGCgAgAA-GGUAAagccCGCCa -3' miRNA: 3'- gGCGUGGCCGgUgUUgCCAUU----GCGGc -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 20289 | 0.69 | 0.483948 |
Target: 5'- -gGCuGCCGGCCAUAcCGGgcGCGUUa -3' miRNA: 3'- ggCG-UGGCCGGUGUuGCCauUGCGGc -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 30068 | 0.69 | 0.483948 |
Target: 5'- gUGCACCGGCCGgGAucgaugcggaccCGGcUGcCGCCGc -3' miRNA: 3'- gGCGUGGCCGGUgUU------------GCC-AUuGCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 32093 | 0.69 | 0.483948 |
Target: 5'- gCUGCGCCucGGCUcguCGcCGGUGAgGCCGa -3' miRNA: 3'- -GGCGUGG--CCGGu--GUuGCCAUUgCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 11996 | 0.69 | 0.493908 |
Target: 5'- -aGC-CCGGCCA-GACGGUcACGCUc -3' miRNA: 3'- ggCGuGGCCGGUgUUGCCAuUGCGGc -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 5742 | 0.68 | 0.502951 |
Target: 5'- gCgGCACCGGCUACcguuucgAGCGGgaccauuacgGACGCUu -3' miRNA: 3'- -GgCGUGGCCGGUG-------UUGCCa---------UUGCGGc -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 31683 | 0.68 | 0.502951 |
Target: 5'- uCCGagAUCGGCCGCAuccccguGCuGGUGACGCg- -3' miRNA: 3'- -GGCg-UGGCCGGUGU-------UG-CCAUUGCGgc -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 14693 | 0.68 | 0.50396 |
Target: 5'- gCCGUAgcuCCGGCCGCcACGcUAccgccuGCGCCGc -3' miRNA: 3'- -GGCGU---GGCCGGUGuUGCcAU------UGCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 4847 | 0.68 | 0.50396 |
Target: 5'- -gGCGCCGGCaACAACGuu-GCgGCCGg -3' miRNA: 3'- ggCGUGGCCGgUGUUGCcauUG-CGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 29474 | 0.68 | 0.50396 |
Target: 5'- gCCGC-CUGGCU---GCGGgcGCGUCGg -3' miRNA: 3'- -GGCGuGGCCGGuguUGCCauUGCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 37746 | 0.68 | 0.50396 |
Target: 5'- gUCGCGgCaGCUugAGCGGgauCGCCGa -3' miRNA: 3'- -GGCGUgGcCGGugUUGCCauuGCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 47734 | 0.68 | 0.50396 |
Target: 5'- gCGCACCGGCgugcCACAgcucgacgaugGCGGcccgguCGCCGu -3' miRNA: 3'- gGCGUGGCCG----GUGU-----------UGCCauu---GCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 18091 | 0.68 | 0.50396 |
Target: 5'- -gGCGCCGGCCAau-CGGUAu--CCGa -3' miRNA: 3'- ggCGUGGCCGGUguuGCCAUugcGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 32495 | 0.68 | 0.50396 |
Target: 5'- aCCGUGCUGGUgUGC-GCGGUAagagcGCGCCGa -3' miRNA: 3'- -GGCGUGGCCG-GUGuUGCCAU-----UGCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 29420 | 0.68 | 0.523297 |
Target: 5'- -gGUGCCGGUCGaaaaccucucgguCAGCGGccUGACGCCa -3' miRNA: 3'- ggCGUGGCCGGU-------------GUUGCC--AUUGCGGc -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 31087 | 0.68 | 0.524323 |
Target: 5'- uCCGUGCCGGUCcuuGCGGcaauGCGCUGc -3' miRNA: 3'- -GGCGUGGCCGGuguUGCCau--UGCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 8288 | 0.68 | 0.528434 |
Target: 5'- gUCGuCGCC-GUCGCAGCcagcgucauccgcagGGUAACGCCGu -3' miRNA: 3'- -GGC-GUGGcCGGUGUUG---------------CCAUUGCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 18357 | 0.68 | 0.533589 |
Target: 5'- cCCGCGCguCGGCCGauuccguCAGCGGUcGCGgCu -3' miRNA: 3'- -GGCGUG--GCCGGU-------GUUGCCAuUGCgGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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