miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12358 5' -52.9 NC_003324.1 + 30046 0.66 0.824775
Target:  5'- cAUGCCGCCGcCCAUCAcgccGCCggucGCGa -3'
miRNA:   3'- aUGUGGUGGU-GGUAGUaau-CGGa---CGC- -5'
12358 5' -52.9 NC_003324.1 + 49813 0.66 0.815261
Target:  5'- gUGCGCcCGCUgaACCAUCcc--GCCUGCa -3'
miRNA:   3'- -AUGUG-GUGG--UGGUAGuaauCGGACGc -5'
12358 5' -52.9 NC_003324.1 + 42545 0.66 0.805543
Target:  5'- gGCACCAUUGCCAgUCGU--GCUUGCc -3'
miRNA:   3'- aUGUGGUGGUGGU-AGUAauCGGACGc -5'
12358 5' -52.9 NC_003324.1 + 45502 0.66 0.795632
Target:  5'- gGCugCACCGCCgAUCAc-AGCCgucgGUGc -3'
miRNA:   3'- aUGugGUGGUGG-UAGUaaUCGGa---CGC- -5'
12358 5' -52.9 NC_003324.1 + 11868 0.66 0.795632
Target:  5'- gGCACCAUCACCAgugaaguaaagUCu---GuCCUGCGc -3'
miRNA:   3'- aUGUGGUGGUGGU-----------AGuaauC-GGACGC- -5'
12358 5' -52.9 NC_003324.1 + 52000 0.66 0.788585
Target:  5'- cACGCCGCCACCAUCucgaucucgucgauGuUCUGCu -3'
miRNA:   3'- aUGUGGUGGUGGUAGuaau----------C-GGACGc -5'
12358 5' -52.9 NC_003324.1 + 1600 0.67 0.775278
Target:  5'- cGCACCACUGCCGccggauccUCGcUGGCCcgGCc -3'
miRNA:   3'- aUGUGGUGGUGGU--------AGUaAUCGGa-CGc -5'
12358 5' -52.9 NC_003324.1 + 48467 0.67 0.775278
Target:  5'- cGCGCCAUCAaagcagaCAUCG--AGCgCUGCGa -3'
miRNA:   3'- aUGUGGUGGUg------GUAGUaaUCG-GACGC- -5'
12358 5' -52.9 NC_003324.1 + 50530 0.67 0.775278
Target:  5'- cGCAgCCAgCACCcgCGUUGaCCUGCu -3'
miRNA:   3'- aUGU-GGUgGUGGuaGUAAUcGGACGc -5'
12358 5' -52.9 NC_003324.1 + 24845 0.67 0.764859
Target:  5'- -uCACCACCGaCAUCGUaauCCUGCGc -3'
miRNA:   3'- auGUGGUGGUgGUAGUAaucGGACGC- -5'
12358 5' -52.9 NC_003324.1 + 2438 0.67 0.764859
Target:  5'- gACGCCGgcggcuuguuccCCACCAacuUCAagUUGGCCUaGCGc -3'
miRNA:   3'- aUGUGGU------------GGUGGU---AGU--AAUCGGA-CGC- -5'
12358 5' -52.9 NC_003324.1 + 49751 0.67 0.764859
Target:  5'- gGCG-CACCACCAUCAcgUGGaacgCUGCa -3'
miRNA:   3'- aUGUgGUGGUGGUAGUa-AUCg---GACGc -5'
12358 5' -52.9 NC_003324.1 + 10298 0.67 0.764859
Target:  5'- aUACGCCACCACguUCcgccGCgUGCa -3'
miRNA:   3'- -AUGUGGUGGUGguAGuaauCGgACGc -5'
12358 5' -52.9 NC_003324.1 + 5158 0.67 0.754296
Target:  5'- cGCGCCGCUuaaGCUAUCA--GGCC-GCGu -3'
miRNA:   3'- aUGUGGUGG---UGGUAGUaaUCGGaCGC- -5'
12358 5' -52.9 NC_003324.1 + 24039 0.67 0.747894
Target:  5'- aUGCACuCGCCACCGUCuugaacgacuucGGCC-GCGu -3'
miRNA:   3'- -AUGUG-GUGGUGGUAGuaa---------UCGGaCGC- -5'
12358 5' -52.9 NC_003324.1 + 54271 0.67 0.742524
Target:  5'- gGCAUCAgCGCCGagcCGUUgcuggaaGGCCUGCGu -3'
miRNA:   3'- aUGUGGUgGUGGUa--GUAA-------UCGGACGC- -5'
12358 5' -52.9 NC_003324.1 + 1100 0.67 0.732784
Target:  5'- aGC-CCGCCGCCGUCAgcgAGCUUa-- -3'
miRNA:   3'- aUGuGGUGGUGGUAGUaa-UCGGAcgc -5'
12358 5' -52.9 NC_003324.1 + 18119 0.68 0.721862
Target:  5'- gGCACuCGCCGCCuAUCGcaUGGCCcGUGg -3'
miRNA:   3'- aUGUG-GUGGUGG-UAGUa-AUCGGaCGC- -5'
12358 5' -52.9 NC_003324.1 + 47636 0.68 0.710845
Target:  5'- gGCgACCggGCCGCCAUCGUcgAGCUgugGCa -3'
miRNA:   3'- aUG-UGG--UGGUGGUAGUAa-UCGGa--CGc -5'
12358 5' -52.9 NC_003324.1 + 30484 0.68 0.699746
Target:  5'- gGCGCCGCCgagcagGCCcUCGgaaacugcGCCUGCGa -3'
miRNA:   3'- aUGUGGUGG------UGGuAGUaau-----CGGACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.