miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12360 5' -59.2 NC_003324.1 + 21299 0.66 0.47912
Target:  5'- cGCGUuCGCCGCCUcGCCggCGAUAu-- -3'
miRNA:   3'- uCGCGcGCGGCGGA-UGGa-GCUGUuga -5'
12360 5' -59.2 NC_003324.1 + 21306 0.69 0.343564
Target:  5'- uGGaaaCGCGCCGUCgcCUUCGGCAGCUc -3'
miRNA:   3'- -UCgc-GCGCGGCGGauGGAGCUGUUGA- -5'
12360 5' -59.2 NC_003324.1 + 21849 0.7 0.30494
Target:  5'- -uCGCGCaGCCggGCCU-CCUCGGCGGCc -3'
miRNA:   3'- ucGCGCG-CGG--CGGAuGGAGCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 22106 0.66 0.509308
Target:  5'- cGGaCGCGCGCaaGgCUGCgCUCGACAuGCg -3'
miRNA:   3'- -UC-GCGCGCGg-CgGAUG-GAGCUGU-UGa -5'
12360 5' -59.2 NC_003324.1 + 22702 0.73 0.198637
Target:  5'- uGCaGCGCGUCGCggGgCUCGGCAACg -3'
miRNA:   3'- uCG-CGCGCGGCGgaUgGAGCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 24898 0.69 0.327703
Target:  5'- cGGCGCGauCCGCCUGCCga-ACAAUg -3'
miRNA:   3'- -UCGCGCgcGGCGGAUGGagcUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 25065 0.66 0.51955
Target:  5'- aAGCa-GCGCCGCC-ACCUCaACAAg- -3'
miRNA:   3'- -UCGcgCGCGGCGGaUGGAGcUGUUga -5'
12360 5' -59.2 NC_003324.1 + 26828 0.66 0.47912
Target:  5'- uGGCGcCGCuCCGCUgagUGCCUCGuCGAUc -3'
miRNA:   3'- -UCGC-GCGcGGCGG---AUGGAGCuGUUGa -5'
12360 5' -59.2 NC_003324.1 + 27928 1.08 0.000525
Target:  5'- aAGCGCGCGCCGCCUACCUCGACAACUa -3'
miRNA:   3'- -UCGCGCGCGGCGGAUGGAGCUGUUGA- -5'
12360 5' -59.2 NC_003324.1 + 29144 0.68 0.41238
Target:  5'- cGGCGUGU-CCGUCgaggACCUCGcCAGCa -3'
miRNA:   3'- -UCGCGCGcGGCGGa---UGGAGCuGUUGa -5'
12360 5' -59.2 NC_003324.1 + 29428 0.67 0.43087
Target:  5'- uGCGCGCcgggaaccgGUCGCCauucucccCCUCGACGAUg -3'
miRNA:   3'- uCGCGCG---------CGGCGGau------GGAGCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 29970 0.67 0.4384
Target:  5'- cAGCGCgccgaagaucGCGCCGuauccacCCUGCCUgaugucaCGACGGCa -3'
miRNA:   3'- -UCGCG----------CGCGGC-------GGAUGGA-------GCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 30240 0.67 0.469252
Target:  5'- gAGCGaCGCcaCCGCCgacACCaUCGGCGAUg -3'
miRNA:   3'- -UCGC-GCGc-GGCGGa--UGG-AGCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 30550 0.69 0.35997
Target:  5'- uGCGaCGCGCUGCuCUACUccagCGGCGAUc -3'
miRNA:   3'- uCGC-GCGCGGCG-GAUGGa---GCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 30620 0.67 0.459489
Target:  5'- gAGCaGCGCGUCGCagcgGCagCGGCAGCg -3'
miRNA:   3'- -UCG-CGCGCGGCGga--UGgaGCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 31138 0.69 0.319978
Target:  5'- uGCGCcugGCGCUgcagGCCUGCCUCGcGgAGCUg -3'
miRNA:   3'- uCGCG---CGCGG----CGGAUGGAGC-UgUUGA- -5'
12360 5' -59.2 NC_003324.1 + 31238 0.69 0.34115
Target:  5'- cAGCGCcaGCGCCGCCgGCCgcacugcgcguuuuUgCGGCGGCg -3'
miRNA:   3'- -UCGCG--CGCGGCGGaUGG--------------A-GCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 34401 0.67 0.440294
Target:  5'- aGGCGaacuCGCCGCCguCCUCGGCAu-- -3'
miRNA:   3'- -UCGCgc--GCGGCGGauGGAGCUGUuga -5'
12360 5' -59.2 NC_003324.1 + 34473 0.72 0.220321
Target:  5'- cGGCgGCGaGUCGCCUAUCUCGAUcGCUu -3'
miRNA:   3'- -UCG-CGCgCGGCGGAUGGAGCUGuUGA- -5'
12360 5' -59.2 NC_003324.1 + 35126 0.66 0.509308
Target:  5'- cAGCGC-CGUCGCCguugACCUCaGCGcCUu -3'
miRNA:   3'- -UCGCGcGCGGCGGa---UGGAGcUGUuGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.