miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12360 5' -59.2 NC_003324.1 + 21849 0.7 0.30494
Target:  5'- -uCGCGCaGCCggGCCU-CCUCGGCGGCc -3'
miRNA:   3'- ucGCGCG-CGG--CGGAuGGAGCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 20603 0.7 0.31239
Target:  5'- uGGCGC-CGUCGCCagugACUUCGACggUa -3'
miRNA:   3'- -UCGCGcGCGGCGGa---UGGAGCUGuuGa -5'
12360 5' -59.2 NC_003324.1 + 31138 0.69 0.319978
Target:  5'- uGCGCcugGCGCUgcagGCCUGCCUCGcGgAGCUg -3'
miRNA:   3'- uCGCG---CGCGG----CGGAUGGAGC-UgUUGA- -5'
12360 5' -59.2 NC_003324.1 + 44310 0.69 0.327703
Target:  5'- gGGCGCggugGCGCgGCCgauaGCCUCuGCAGCc -3'
miRNA:   3'- -UCGCG----CGCGgCGGa---UGGAGcUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 6814 0.69 0.335565
Target:  5'- --aGCGUGCCGCU--CCUCGACuACg -3'
miRNA:   3'- ucgCGCGCGGCGGauGGAGCUGuUGa -5'
12360 5' -59.2 NC_003324.1 + 31238 0.69 0.34115
Target:  5'- cAGCGCcaGCGCCGCCgGCCgcacugcgcguuuuUgCGGCGGCg -3'
miRNA:   3'- -UCGCG--CGCGGCGGaUGG--------------A-GCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 30550 0.69 0.35997
Target:  5'- uGCGaCGCGCUGCuCUACUccagCGGCGAUc -3'
miRNA:   3'- uCGC-GCGCGGCG-GAUGGa---GCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 8201 0.67 0.421564
Target:  5'- cGGCGCGCGCCuGgC-ACUUCGACc--- -3'
miRNA:   3'- -UCGCGCGCGG-CgGaUGGAGCUGuuga -5'
12360 5' -59.2 NC_003324.1 + 48689 0.66 0.499153
Target:  5'- uGCGgGCGCCGaCCUGCgugucgauugggUUCGGCuuCUu -3'
miRNA:   3'- uCGCgCGCGGC-GGAUG------------GAGCUGuuGA- -5'
12360 5' -59.2 NC_003324.1 + 51148 0.66 0.47912
Target:  5'- cGGCGgagagaGaCGUCGUCUGCCUCGugGAg- -3'
miRNA:   3'- -UCGCg-----C-GCGGCGGAUGGAGCugUUga -5'
12360 5' -59.2 NC_003324.1 + 19465 0.67 0.469252
Target:  5'- cGGCGCGaCGCgCGCCgGCgUCGAUccaucGCUg -3'
miRNA:   3'- -UCGCGC-GCG-GCGGaUGgAGCUGu----UGA- -5'
12360 5' -59.2 NC_003324.1 + 6314 0.67 0.469252
Target:  5'- uGGCGCuugcuGCGCUGCUgcugcGCCUCGGCc--- -3'
miRNA:   3'- -UCGCG-----CGCGGCGGa----UGGAGCUGuuga -5'
12360 5' -59.2 NC_003324.1 + 20886 0.67 0.459489
Target:  5'- uGCGCGUcaccaacacgGuCCGCC-GCCUCGcCAACg -3'
miRNA:   3'- uCGCGCG----------C-GGCGGaUGGAGCuGUUGa -5'
12360 5' -59.2 NC_003324.1 + 22106 0.66 0.509308
Target:  5'- cGGaCGCGCGCaaGgCUGCgCUCGACAuGCg -3'
miRNA:   3'- -UC-GCGCGCGg-CgGAUG-GAGCUGU-UGa -5'
12360 5' -59.2 NC_003324.1 + 2519 0.66 0.509308
Target:  5'- uGGUGgGgaacaaGCCGCCgGCgUCGGCGGCUu -3'
miRNA:   3'- -UCGCgCg-----CGGCGGaUGgAGCUGUUGA- -5'
12360 5' -59.2 NC_003324.1 + 56585 0.66 0.51955
Target:  5'- uGCGCaGCGCCGCgCUcauCCUCGuuuGACc -3'
miRNA:   3'- uCGCG-CGCGGCG-GAu--GGAGCug-UUGa -5'
12360 5' -59.2 NC_003324.1 + 25065 0.66 0.51955
Target:  5'- aAGCa-GCGCCGCC-ACCUCaACAAg- -3'
miRNA:   3'- -UCGcgCGCGGCGGaUGGAGcUGUUga -5'
12360 5' -59.2 NC_003324.1 + 14668 0.66 0.51955
Target:  5'- cGCcUGCGCCGCCgGCCgcuugCGcCGGCa -3'
miRNA:   3'- uCGcGCGCGGCGGaUGGa----GCuGUUGa -5'
12360 5' -59.2 NC_003324.1 + 42943 0.66 0.529871
Target:  5'- -uCGCGgGCCgGCCggcaGCCUCGAauacCAGCa -3'
miRNA:   3'- ucGCGCgCGG-CGGa---UGGAGCU----GUUGa -5'
12360 5' -59.2 NC_003324.1 + 27928 1.08 0.000525
Target:  5'- aAGCGCGCGCCGCCUACCUCGACAACUa -3'
miRNA:   3'- -UCGCGCGCGGCGGAUGGAGCUGUUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.