miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12360 5' -59.2 NC_003324.1 + 44841 0.66 0.47912
Target:  5'- uGGCGUGC-CCGCugCUGCCgUgGGCAGCc -3'
miRNA:   3'- -UCGCGCGcGGCG--GAUGG-AgCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 8201 0.67 0.421564
Target:  5'- cGGCGCGCGCCuGgC-ACUUCGACc--- -3'
miRNA:   3'- -UCGCGCGCGG-CgGaUGGAGCUGuuga -5'
12360 5' -59.2 NC_003324.1 + 29428 0.67 0.43087
Target:  5'- uGCGCGCcgggaaccgGUCGCCauucucccCCUCGACGAUg -3'
miRNA:   3'- uCGCGCG---------CGGCGGau------GGAGCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 12116 0.67 0.440294
Target:  5'- cGGaGCGCGCgGCCUcgGCCgggaauuucacCGACAACa -3'
miRNA:   3'- -UCgCGCGCGgCGGA--UGGa----------GCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 34401 0.67 0.440294
Target:  5'- aGGCGaacuCGCCGCCguCCUCGGCAu-- -3'
miRNA:   3'- -UCGCgc--GCGGCGGauGGAGCUGUuga -5'
12360 5' -59.2 NC_003324.1 + 42300 0.67 0.449835
Target:  5'- --aGUGCGCCGCCUGCCaCGuGCcgGGCg -3'
miRNA:   3'- ucgCGCGCGGCGGAUGGaGC-UG--UUGa -5'
12360 5' -59.2 NC_003324.1 + 30240 0.67 0.469252
Target:  5'- gAGCGaCGCcaCCGCCgacACCaUCGGCGAUg -3'
miRNA:   3'- -UCGC-GCGc-GGCGGa--UGG-AGCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 26828 0.66 0.47912
Target:  5'- uGGCGcCGCuCCGCUgagUGCCUCGuCGAUc -3'
miRNA:   3'- -UCGC-GCGcGGCGG---AUGGAGCuGUUGa -5'
12360 5' -59.2 NC_003324.1 + 39664 0.66 0.47912
Target:  5'- --aGCGCGCCcUCUuCCUCGACAucguGCUu -3'
miRNA:   3'- ucgCGCGCGGcGGAuGGAGCUGU----UGA- -5'
12360 5' -59.2 NC_003324.1 + 30550 0.69 0.35997
Target:  5'- uGCGaCGCGCUGCuCUACUccagCGGCGAUc -3'
miRNA:   3'- uCGC-GCGCGGCG-GAUGGa---GCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 31238 0.69 0.34115
Target:  5'- cAGCGCcaGCGCCGCCgGCCgcacugcgcguuuuUgCGGCGGCg -3'
miRNA:   3'- -UCGCG--CGCGGCGGaUGG--------------A-GCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 6814 0.69 0.335565
Target:  5'- --aGCGUGCCGCU--CCUCGACuACg -3'
miRNA:   3'- ucgCGCGCGGCGGauGGAGCUGuUGa -5'
12360 5' -59.2 NC_003324.1 + 6141 0.73 0.178837
Target:  5'- uAGCGgacugaccCGCGCCGCCUggaaugcgcuGCC-CGACGACa -3'
miRNA:   3'- -UCGC--------GCGCGGCGGA----------UGGaGCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 43165 0.71 0.2496
Target:  5'- gAGCGaGCGCCaauccgaGCCaGCCUCGACGAa- -3'
miRNA:   3'- -UCGCgCGCGG-------CGGaUGGAGCUGUUga -5'
12360 5' -59.2 NC_003324.1 + 17610 0.71 0.255957
Target:  5'- cGGCGCGCcguugagcacgauGCCGCCgagcucggGCCcgaggauaUCGACGACg -3'
miRNA:   3'- -UCGCGCG-------------CGGCGGa-------UGG--------AGCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 53928 0.7 0.290451
Target:  5'- aAGUGCGCuucGCCGCCUGCagaaagacgcCGACAAUUu -3'
miRNA:   3'- -UCGCGCG---CGGCGGAUGga--------GCUGUUGA- -5'
12360 5' -59.2 NC_003324.1 + 21849 0.7 0.30494
Target:  5'- -uCGCGCaGCCggGCCU-CCUCGGCGGCc -3'
miRNA:   3'- ucGCGCG-CGG--CGGAuGGAGCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 20603 0.7 0.31239
Target:  5'- uGGCGC-CGUCGCCagugACUUCGACggUa -3'
miRNA:   3'- -UCGCGcGCGGCGGa---UGGAGCUGuuGa -5'
12360 5' -59.2 NC_003324.1 + 31138 0.69 0.319978
Target:  5'- uGCGCcugGCGCUgcagGCCUGCCUCGcGgAGCUg -3'
miRNA:   3'- uCGCG---CGCGG----CGGAUGGAGC-UgUUGA- -5'
12360 5' -59.2 NC_003324.1 + 44310 0.69 0.327703
Target:  5'- gGGCGCggugGCGCgGCCgauaGCCUCuGCAGCc -3'
miRNA:   3'- -UCGCG----CGCGgCGGa---UGGAGcUGUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.