miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12360 5' -59.2 NC_003324.1 + 27928 1.08 0.000525
Target:  5'- aAGCGCGCGCCGCCUACCUCGACAACUa -3'
miRNA:   3'- -UCGCGCGCGGCGGAUGGAGCUGUUGA- -5'
12360 5' -59.2 NC_003324.1 + 47692 0.81 0.050137
Target:  5'- cGGCGCGCuucGCgGCCU-CCUCGACGACa -3'
miRNA:   3'- -UCGCGCG---CGgCGGAuGGAGCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 8269 0.76 0.116178
Target:  5'- aGGCGCGCGCCGCCggGCa--GugAGCa -3'
miRNA:   3'- -UCGCGCGCGGCGGa-UGgagCugUUGa -5'
12360 5' -59.2 NC_003324.1 + 6141 0.73 0.178837
Target:  5'- uAGCGgacugaccCGCGCCGCCUggaaugcgcuGCC-CGACGACa -3'
miRNA:   3'- -UCGC--------GCGCGGCGGA----------UGGaGCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 5539 0.73 0.178837
Target:  5'- cGgGCGaCGCCGCCUGCCUaccCAGCg -3'
miRNA:   3'- uCgCGC-GCGGCGGAUGGAgcuGUUGa -5'
12360 5' -59.2 NC_003324.1 + 44413 0.73 0.198637
Target:  5'- cAGCGCGCGCCGUggCUGCagaggcuaUCGGCcGCg -3'
miRNA:   3'- -UCGCGCGCGGCG--GAUGg-------AGCUGuUGa -5'
12360 5' -59.2 NC_003324.1 + 22702 0.73 0.198637
Target:  5'- uGCaGCGCGUCGCggGgCUCGGCAACg -3'
miRNA:   3'- uCG-CGCGCGGCGgaUgGAGCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 34473 0.72 0.220321
Target:  5'- cGGCgGCGaGUCGCCUAUCUCGAUcGCUu -3'
miRNA:   3'- -UCG-CGCgCGGCGGAUGGAGCUGuUGA- -5'
12360 5' -59.2 NC_003324.1 + 43165 0.71 0.2496
Target:  5'- gAGCGaGCGCCaauccgaGCCaGCCUCGACGAa- -3'
miRNA:   3'- -UCGCgCGCGG-------CGGaUGGAGCUGUUga -5'
12360 5' -59.2 NC_003324.1 + 17610 0.71 0.255957
Target:  5'- cGGCGCGCcguugagcacgauGCCGCCgagcucggGCCcgaggauaUCGACGACg -3'
miRNA:   3'- -UCGCGCG-------------CGGCGGa-------UGG--------AGCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 19165 0.7 0.290451
Target:  5'- uGC-CGCGagCGCCUACCguagcgCGACGACa -3'
miRNA:   3'- uCGcGCGCg-GCGGAUGGa-----GCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 53928 0.7 0.290451
Target:  5'- aAGUGCGCuucGCCGCCUGCagaaagacgcCGACAAUUu -3'
miRNA:   3'- -UCGCGCG---CGGCGGAUGga--------GCUGUUGA- -5'
12360 5' -59.2 NC_003324.1 + 21849 0.7 0.30494
Target:  5'- -uCGCGCaGCCggGCCU-CCUCGGCGGCc -3'
miRNA:   3'- ucGCGCG-CGG--CGGAuGGAGCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 20603 0.7 0.31239
Target:  5'- uGGCGC-CGUCGCCagugACUUCGACggUa -3'
miRNA:   3'- -UCGCGcGCGGCGGa---UGGAGCUGuuGa -5'
12360 5' -59.2 NC_003324.1 + 31138 0.69 0.319978
Target:  5'- uGCGCcugGCGCUgcagGCCUGCCUCGcGgAGCUg -3'
miRNA:   3'- uCGCG---CGCGG----CGGAUGGAGC-UgUUGA- -5'
12360 5' -59.2 NC_003324.1 + 24898 0.69 0.327703
Target:  5'- cGGCGCGauCCGCCUGCCga-ACAAUg -3'
miRNA:   3'- -UCGCGCgcGGCGGAUGGagcUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 44310 0.69 0.327703
Target:  5'- gGGCGCggugGCGCgGCCgauaGCCUCuGCAGCc -3'
miRNA:   3'- -UCGCG----CGCGgCGGa---UGGAGcUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 56088 0.69 0.327703
Target:  5'- cGGCGCGCuCCGcCCUGugggugcgcuUCUCGACGAUc -3'
miRNA:   3'- -UCGCGCGcGGC-GGAU----------GGAGCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 6814 0.69 0.335565
Target:  5'- --aGCGUGCCGCU--CCUCGACuACg -3'
miRNA:   3'- ucgCGCGCGGCGGauGGAGCUGuUGa -5'
12360 5' -59.2 NC_003324.1 + 31238 0.69 0.34115
Target:  5'- cAGCGCcaGCGCCGCCgGCCgcacugcgcguuuuUgCGGCGGCg -3'
miRNA:   3'- -UCGCG--CGCGGCGGaUGG--------------A-GCUGUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.