miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12360 5' -59.2 NC_003324.1 + 251 0.68 0.368376
Target:  5'- uGGCGCGCGCCGUCUACa--GGa---- -3'
miRNA:   3'- -UCGCGCGCGGCGGAUGgagCUguuga -5'
12360 5' -59.2 NC_003324.1 + 2519 0.66 0.509308
Target:  5'- uGGUGgGgaacaaGCCGCCgGCgUCGGCGGCUu -3'
miRNA:   3'- -UCGCgCg-----CGGCGGaUGgAGCUGUUGA- -5'
12360 5' -59.2 NC_003324.1 + 2677 0.66 0.509308
Target:  5'- cAGCGCG-GUgGCC-GCUUCGGCAAg- -3'
miRNA:   3'- -UCGCGCgCGgCGGaUGGAGCUGUUga -5'
12360 5' -59.2 NC_003324.1 + 5539 0.73 0.178837
Target:  5'- cGgGCGaCGCCGCCUGCCUaccCAGCg -3'
miRNA:   3'- uCgCGC-GCGGCGGAUGGAgcuGUUGa -5'
12360 5' -59.2 NC_003324.1 + 6141 0.73 0.178837
Target:  5'- uAGCGgacugaccCGCGCCGCCUggaaugcgcuGCC-CGACGACa -3'
miRNA:   3'- -UCGC--------GCGCGGCGGA----------UGGaGCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 6314 0.67 0.469252
Target:  5'- uGGCGCuugcuGCGCUGCUgcugcGCCUCGGCc--- -3'
miRNA:   3'- -UCGCG-----CGCGGCGGa----UGGAGCUGuuga -5'
12360 5' -59.2 NC_003324.1 + 6814 0.69 0.335565
Target:  5'- --aGCGUGCCGCU--CCUCGACuACg -3'
miRNA:   3'- ucgCGCGCGGCGGauGGAGCUGuUGa -5'
12360 5' -59.2 NC_003324.1 + 8201 0.67 0.421564
Target:  5'- cGGCGCGCGCCuGgC-ACUUCGACc--- -3'
miRNA:   3'- -UCGCGCGCGG-CgGaUGGAGCUGuuga -5'
12360 5' -59.2 NC_003324.1 + 8269 0.76 0.116178
Target:  5'- aGGCGCGCGCCGCCggGCa--GugAGCa -3'
miRNA:   3'- -UCGCGCGCGGCGGa-UGgagCugUUGa -5'
12360 5' -59.2 NC_003324.1 + 12116 0.67 0.440294
Target:  5'- cGGaGCGCGCgGCCUcgGCCgggaauuucacCGACAACa -3'
miRNA:   3'- -UCgCGCGCGgCGGA--UGGa----------GCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 14668 0.66 0.51955
Target:  5'- cGCcUGCGCCGCCgGCCgcuugCGcCGGCa -3'
miRNA:   3'- uCGcGCGCGGCGGaUGGa----GCuGUUGa -5'
12360 5' -59.2 NC_003324.1 + 16747 0.66 0.529871
Target:  5'- cGGCGaGUucauGCCGCuCUGCaCUCGACAuuucGCUg -3'
miRNA:   3'- -UCGCgCG----CGGCG-GAUG-GAGCUGU----UGA- -5'
12360 5' -59.2 NC_003324.1 + 17610 0.71 0.255957
Target:  5'- cGGCGCGCcguugagcacgauGCCGCCgagcucggGCCcgaggauaUCGACGACg -3'
miRNA:   3'- -UCGCGCG-------------CGGCGGa-------UGG--------AGCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 19165 0.7 0.290451
Target:  5'- uGC-CGCGagCGCCUACCguagcgCGACGACa -3'
miRNA:   3'- uCGcGCGCg-GCGGAUGGa-----GCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 19392 0.66 0.509308
Target:  5'- cGGCGCGCGUCGC--GCCgugcaugaggUCGGCuagauGCUg -3'
miRNA:   3'- -UCGCGCGCGGCGgaUGG----------AGCUGu----UGA- -5'
12360 5' -59.2 NC_003324.1 + 19465 0.67 0.469252
Target:  5'- cGGCGCGaCGCgCGCCgGCgUCGAUccaucGCUg -3'
miRNA:   3'- -UCGCGC-GCG-GCGGaUGgAGCUGu----UGA- -5'
12360 5' -59.2 NC_003324.1 + 20273 0.66 0.529871
Target:  5'- gGGCGCGUuacGCgCGCCUcucugACCgaggcugcCGGCAGCg -3'
miRNA:   3'- -UCGCGCG---CG-GCGGA-----UGGa-------GCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 20603 0.7 0.31239
Target:  5'- uGGCGC-CGUCGCCagugACUUCGACggUa -3'
miRNA:   3'- -UCGCGcGCGGCGGa---UGGAGCUGuuGa -5'
12360 5' -59.2 NC_003324.1 + 20886 0.67 0.459489
Target:  5'- uGCGCGUcaccaacacgGuCCGCC-GCCUCGcCAACg -3'
miRNA:   3'- uCGCGCG----------C-GGCGGaUGGAGCuGUUGa -5'
12360 5' -59.2 NC_003324.1 + 21162 0.67 0.449835
Target:  5'- cAGCaCGCGCCGCggcgGCCgacaaGGCAGCg -3'
miRNA:   3'- -UCGcGCGCGGCGga--UGGag---CUGUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.