miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12360 5' -59.2 NC_003324.1 + 56585 0.66 0.51955
Target:  5'- uGCGCaGCGCCGCgCUcauCCUCGuuuGACc -3'
miRNA:   3'- uCGCG-CGCGGCG-GAu--GGAGCug-UUGa -5'
12360 5' -59.2 NC_003324.1 + 56088 0.69 0.327703
Target:  5'- cGGCGCGCuCCGcCCUGugggugcgcuUCUCGACGAUc -3'
miRNA:   3'- -UCGCGCGcGGC-GGAU----------GGAGCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 53928 0.7 0.290451
Target:  5'- aAGUGCGCuucGCCGCCUGCagaaagacgcCGACAAUUu -3'
miRNA:   3'- -UCGCGCG---CGGCGGAUGga--------GCUGUUGA- -5'
12360 5' -59.2 NC_003324.1 + 51148 0.66 0.47912
Target:  5'- cGGCGgagagaGaCGUCGUCUGCCUCGugGAg- -3'
miRNA:   3'- -UCGCg-----C-GCGGCGGAUGGAGCugUUga -5'
12360 5' -59.2 NC_003324.1 + 48689 0.66 0.499153
Target:  5'- uGCGgGCGCCGaCCUGCgugucgauugggUUCGGCuuCUu -3'
miRNA:   3'- uCGCgCGCGGC-GGAUG------------GAGCUGuuGA- -5'
12360 5' -59.2 NC_003324.1 + 47692 0.81 0.050137
Target:  5'- cGGCGCGCuucGCgGCCU-CCUCGACGACa -3'
miRNA:   3'- -UCGCGCG---CGgCGGAuGGAGCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 46007 0.67 0.449835
Target:  5'- uGCG-GCGUCGCUUGCUUCGcuuccgaaGCGGCg -3'
miRNA:   3'- uCGCgCGCGGCGGAUGGAGC--------UGUUGa -5'
12360 5' -59.2 NC_003324.1 + 44841 0.66 0.47912
Target:  5'- uGGCGUGC-CCGCugCUGCCgUgGGCAGCc -3'
miRNA:   3'- -UCGCGCGcGGCG--GAUGG-AgCUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 44413 0.73 0.198637
Target:  5'- cAGCGCGCGCCGUggCUGCagaggcuaUCGGCcGCg -3'
miRNA:   3'- -UCGCGCGCGGCG--GAUGg-------AGCUGuUGa -5'
12360 5' -59.2 NC_003324.1 + 44345 0.66 0.489088
Target:  5'- cGGCGCGCGCUGCgc-CCUUGAa---- -3'
miRNA:   3'- -UCGCGCGCGGCGgauGGAGCUguuga -5'
12360 5' -59.2 NC_003324.1 + 44310 0.69 0.327703
Target:  5'- gGGCGCggugGCGCgGCCgauaGCCUCuGCAGCc -3'
miRNA:   3'- -UCGCG----CGCGgCGGa---UGGAGcUGUUGa -5'
12360 5' -59.2 NC_003324.1 + 43165 0.71 0.2496
Target:  5'- gAGCGaGCGCCaauccgaGCCaGCCUCGACGAa- -3'
miRNA:   3'- -UCGCgCGCGG-------CGGaUGGAGCUGUUga -5'
12360 5' -59.2 NC_003324.1 + 42943 0.66 0.529871
Target:  5'- -uCGCGgGCCgGCCggcaGCCUCGAauacCAGCa -3'
miRNA:   3'- ucGCGCgCGG-CGGa---UGGAGCU----GUUGa -5'
12360 5' -59.2 NC_003324.1 + 42300 0.67 0.449835
Target:  5'- --aGUGCGCCGCCUGCCaCGuGCcgGGCg -3'
miRNA:   3'- ucgCGCGCGGCGGAUGGaGC-UG--UUGa -5'
12360 5' -59.2 NC_003324.1 + 41743 0.68 0.39439
Target:  5'- cAGUGCGCGUCGgCUACgUCGcgccgcCGACg -3'
miRNA:   3'- -UCGCGCGCGGCgGAUGgAGCu-----GUUGa -5'
12360 5' -59.2 NC_003324.1 + 39664 0.66 0.47912
Target:  5'- --aGCGCGCCcUCUuCCUCGACAucguGCUu -3'
miRNA:   3'- ucgCGCGCGGcGGAuGGAGCUGU----UGA- -5'
12360 5' -59.2 NC_003324.1 + 38432 0.67 0.449835
Target:  5'- cGGCGaccaGCGCCGCCccggugcCCUCGugAu-- -3'
miRNA:   3'- -UCGCg---CGCGGCGGau-----GGAGCugUuga -5'
12360 5' -59.2 NC_003324.1 + 38266 0.67 0.421564
Target:  5'- aAGUGCGCccaagGCauCCUgcACCUCGAUAACUa -3'
miRNA:   3'- -UCGCGCG-----CGgcGGA--UGGAGCUGUUGA- -5'
12360 5' -59.2 NC_003324.1 + 35165 0.66 0.489088
Target:  5'- cGGCGC-CGUCGUCUuccagucCCUCGuCAACg -3'
miRNA:   3'- -UCGCGcGCGGCGGAu------GGAGCuGUUGa -5'
12360 5' -59.2 NC_003324.1 + 35126 0.66 0.509308
Target:  5'- cAGCGC-CGUCGCCguugACCUCaGCGcCUu -3'
miRNA:   3'- -UCGCGcGCGGCGGa---UGGAGcUGUuGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.