Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12360 | 5' | -59.2 | NC_003324.1 | + | 20273 | 0.66 | 0.529871 |
Target: 5'- gGGCGCGUuacGCgCGCCUcucugACCgaggcugcCGGCAGCg -3' miRNA: 3'- -UCGCGCG---CG-GCGGA-----UGGa-------GCUGUUGa -5' |
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12360 | 5' | -59.2 | NC_003324.1 | + | 38266 | 0.67 | 0.421564 |
Target: 5'- aAGUGCGCccaagGCauCCUgcACCUCGAUAACUa -3' miRNA: 3'- -UCGCGCG-----CGgcGGA--UGGAGCUGUUGA- -5' |
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12360 | 5' | -59.2 | NC_003324.1 | + | 41743 | 0.68 | 0.39439 |
Target: 5'- cAGUGCGCGUCGgCUACgUCGcgccgcCGACg -3' miRNA: 3'- -UCGCGCGCGGCgGAUGgAGCu-----GUUGa -5' |
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12360 | 5' | -59.2 | NC_003324.1 | + | 27928 | 1.08 | 0.000525 |
Target: 5'- aAGCGCGCGCCGCCUACCUCGACAACUa -3' miRNA: 3'- -UCGCGCGCGGCGGAUGGAGCUGUUGA- -5' |
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12360 | 5' | -59.2 | NC_003324.1 | + | 56585 | 0.66 | 0.51955 |
Target: 5'- uGCGCaGCGCCGCgCUcauCCUCGuuuGACc -3' miRNA: 3'- uCGCG-CGCGGCG-GAu--GGAGCug-UUGa -5' |
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12360 | 5' | -59.2 | NC_003324.1 | + | 2519 | 0.66 | 0.509308 |
Target: 5'- uGGUGgGgaacaaGCCGCCgGCgUCGGCGGCUu -3' miRNA: 3'- -UCGCgCg-----CGGCGGaUGgAGCUGUUGA- -5' |
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12360 | 5' | -59.2 | NC_003324.1 | + | 48689 | 0.66 | 0.499153 |
Target: 5'- uGCGgGCGCCGaCCUGCgugucgauugggUUCGGCuuCUu -3' miRNA: 3'- uCGCgCGCGGC-GGAUG------------GAGCUGuuGA- -5' |
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12360 | 5' | -59.2 | NC_003324.1 | + | 51148 | 0.66 | 0.47912 |
Target: 5'- cGGCGgagagaGaCGUCGUCUGCCUCGugGAg- -3' miRNA: 3'- -UCGCg-----C-GCGGCGGAUGGAGCugUUga -5' |
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12360 | 5' | -59.2 | NC_003324.1 | + | 20886 | 0.67 | 0.459489 |
Target: 5'- uGCGCGUcaccaacacgGuCCGCC-GCCUCGcCAACg -3' miRNA: 3'- uCGCGCG----------C-GGCGGaUGGAGCuGUUGa -5' |
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12360 | 5' | -59.2 | NC_003324.1 | + | 29970 | 0.67 | 0.4384 |
Target: 5'- cAGCGCgccgaagaucGCGCCGuauccacCCUGCCUgaugucaCGACGGCa -3' miRNA: 3'- -UCGCG----------CGCGGC-------GGAUGGA-------GCUGUUGa -5' |
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12360 | 5' | -59.2 | NC_003324.1 | + | 21162 | 0.67 | 0.449835 |
Target: 5'- cAGCaCGCGCCGCggcgGCCgacaaGGCAGCg -3' miRNA: 3'- -UCGcGCGCGGCGga--UGGag---CUGUUGa -5' |
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12360 | 5' | -59.2 | NC_003324.1 | + | 6314 | 0.67 | 0.469252 |
Target: 5'- uGGCGCuugcuGCGCUGCUgcugcGCCUCGGCc--- -3' miRNA: 3'- -UCGCG-----CGCGGCGGa----UGGAGCUGuuga -5' |
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12360 | 5' | -59.2 | NC_003324.1 | + | 42943 | 0.66 | 0.529871 |
Target: 5'- -uCGCGgGCCgGCCggcaGCCUCGAauacCAGCa -3' miRNA: 3'- ucGCGCgCGG-CGGa---UGGAGCU----GUUGa -5' |
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12360 | 5' | -59.2 | NC_003324.1 | + | 38432 | 0.67 | 0.449835 |
Target: 5'- cGGCGaccaGCGCCGCCccggugcCCUCGugAu-- -3' miRNA: 3'- -UCGCg---CGCGGCGGau-----GGAGCugUuga -5' |
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12360 | 5' | -59.2 | NC_003324.1 | + | 14668 | 0.66 | 0.51955 |
Target: 5'- cGCcUGCGCCGCCgGCCgcuugCGcCGGCa -3' miRNA: 3'- uCGcGCGCGGCGGaUGGa----GCuGUUGa -5' |
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12360 | 5' | -59.2 | NC_003324.1 | + | 19465 | 0.67 | 0.469252 |
Target: 5'- cGGCGCGaCGCgCGCCgGCgUCGAUccaucGCUg -3' miRNA: 3'- -UCGCGC-GCG-GCGGaUGgAGCUGu----UGA- -5' |
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12360 | 5' | -59.2 | NC_003324.1 | + | 46007 | 0.67 | 0.449835 |
Target: 5'- uGCG-GCGUCGCUUGCUUCGcuuccgaaGCGGCg -3' miRNA: 3'- uCGCgCGCGGCGGAUGGAGC--------UGUUGa -5' |
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12360 | 5' | -59.2 | NC_003324.1 | + | 29144 | 0.68 | 0.41238 |
Target: 5'- cGGCGUGU-CCGUCgaggACCUCGcCAGCa -3' miRNA: 3'- -UCGCGCGcGGCGGa---UGGAGCuGUUGa -5' |
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12360 | 5' | -59.2 | NC_003324.1 | + | 25065 | 0.66 | 0.51955 |
Target: 5'- aAGCa-GCGCCGCC-ACCUCaACAAg- -3' miRNA: 3'- -UCGcgCGCGGCGGaUGGAGcUGUUga -5' |
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12360 | 5' | -59.2 | NC_003324.1 | + | 22106 | 0.66 | 0.509308 |
Target: 5'- cGGaCGCGCGCaaGgCUGCgCUCGACAuGCg -3' miRNA: 3'- -UC-GCGCGCGg-CgGAUG-GAGCUGU-UGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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