miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12364 5' -62.3 NC_003324.1 + 43718 0.66 0.39286
Target:  5'- -aCCGCCugcugccaaucggGAUCaGGGuCGCGAcugugaaagGCCCGGUa -3'
miRNA:   3'- uaGGCGG-------------CUAG-CUC-GCGCU---------CGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 53654 0.67 0.336327
Target:  5'- -aCCGCCGugcggcaccuUgGAGCGcCGAGCUugauaCGGCg -3'
miRNA:   3'- uaGGCGGCu---------AgCUCGC-GCUCGG-----GCCG- -5'
12364 5' -62.3 NC_003324.1 + 16522 0.67 0.344142
Target:  5'- ---aGCgGAUCGGccuGUGCGuGCUCGGCg -3'
miRNA:   3'- uaggCGgCUAGCU---CGCGCuCGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 18272 0.67 0.344142
Target:  5'- -aCCGCUGAcggaaUCGGccgacGCGCGGGCaaucgcugccCCGGCc -3'
miRNA:   3'- uaGGCGGCU-----AGCU-----CGCGCUCG----------GGCCG- -5'
12364 5' -62.3 NC_003324.1 + 21401 0.67 0.344142
Target:  5'- cGUCCGCgcAUCGAGCGUGuuCuuGGUg -3'
miRNA:   3'- -UAGGCGgcUAGCUCGCGCucGggCCG- -5'
12364 5' -62.3 NC_003324.1 + 40516 0.66 0.376689
Target:  5'- -cCCGauggagccaCGAUCGAGCGCGgcgagaAGCCUcuGGUg -3'
miRNA:   3'- uaGGCg--------GCUAGCUCGCGC------UCGGG--CCG- -5'
12364 5' -62.3 NC_003324.1 + 14072 0.66 0.384293
Target:  5'- gAUCCGCaGAUCGgcaaagcAGCGCucaaggaagcgGAGaCCGGCg -3'
miRNA:   3'- -UAGGCGgCUAGC-------UCGCG-----------CUCgGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 32108 0.66 0.388561
Target:  5'- -gUCGCCGGUgaggcCGAGUGCcuuggucuccgccucGGGCCgGGCc -3'
miRNA:   3'- uaGGCGGCUA-----GCUCGCG---------------CUCGGgCCG- -5'
12364 5' -62.3 NC_003324.1 + 54609 0.66 0.388561
Target:  5'- --aCGUCGAUCGAGCaagaucgaaagacuCGAggacgugcGCCCGGCu -3'
miRNA:   3'- uagGCGGCUAGCUCGc-------------GCU--------CGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 24276 0.67 0.313666
Target:  5'- uUCuCGUCGAUCuGGGCacgGCgGAGCuuGGCg -3'
miRNA:   3'- uAG-GCGGCUAG-CUCG---CG-CUCGggCCG- -5'
12364 5' -62.3 NC_003324.1 + 8192 0.68 0.285278
Target:  5'- -aCUGCCcggCG-GCGCGcGCCUGGCa -3'
miRNA:   3'- uaGGCGGcuaGCuCGCGCuCGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 12100 0.69 0.252695
Target:  5'- gGUCUGUaccUGAUCgcgGAGCGCGcGGCCuCGGCc -3'
miRNA:   3'- -UAGGCG---GCUAG---CUCGCGC-UCGG-GCCG- -5'
12364 5' -62.3 NC_003324.1 + 52667 0.72 0.159662
Target:  5'- gAUCCGCCGcau--GCGCGAGCguggauggucgauCCGGCg -3'
miRNA:   3'- -UAGGCGGCuagcuCGCGCUCG-------------GGCCG- -5'
12364 5' -62.3 NC_003324.1 + 4554 0.71 0.177574
Target:  5'- -gCCGCgccgUGAUCGAGCGCGcgcaGGUCCaGGCc -3'
miRNA:   3'- uaGGCG----GCUAGCUCGCGC----UCGGG-CCG- -5'
12364 5' -62.3 NC_003324.1 + 5965 0.7 0.21176
Target:  5'- -cCCGCCGAaUGgcuaugcAGCGCGAGCaCGGUg -3'
miRNA:   3'- uaGGCGGCUaGC-------UCGCGCUCGgGCCG- -5'
12364 5' -62.3 NC_003324.1 + 49395 0.69 0.223236
Target:  5'- -cCCGggcaaauacUCGAUCGcGaucgGCGAGCCCGGCa -3'
miRNA:   3'- uaGGC---------GGCUAGCuCg---CGCUCGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 20524 0.69 0.223236
Target:  5'- -cCCGCCGAcCGcaAGCGCccaucAGCgCCGGCa -3'
miRNA:   3'- uaGGCGGCUaGC--UCGCGc----UCG-GGCCG- -5'
12364 5' -62.3 NC_003324.1 + 2836 0.69 0.228885
Target:  5'- uUUCGCCGggCGAGgGgGAGCgucaaCGGCc -3'
miRNA:   3'- uAGGCGGCuaGCUCgCgCUCGg----GCCG- -5'
12364 5' -62.3 NC_003324.1 + 40046 0.69 0.240544
Target:  5'- cGUCgGCCGuccacCGuaguuGCGCGGGUCUGGCc -3'
miRNA:   3'- -UAGgCGGCua---GCu----CGCGCUCGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 17430 0.69 0.252695
Target:  5'- -cUCGUCGGUCauGAcGCG-GAGCCCGGUg -3'
miRNA:   3'- uaGGCGGCUAG--CU-CGCgCUCGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.