miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12364 5' -62.3 NC_003324.1 + 29350 1.09 0.000222
Target:  5'- aAUCCGCCGAUCGAGCGCGAGCCCGGCg -3'
miRNA:   3'- -UAGGCGGCUAGCUCGCGCUCGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 34433 0.78 0.059
Target:  5'- --aCGuuGAggcuuaCGAGCGCGAGCUCGGCa -3'
miRNA:   3'- uagGCggCUa-----GCUCGCGCUCGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 8220 0.76 0.077669
Target:  5'- -aUCGCa-GUCGAGCGCGcagcuGCCCGGCg -3'
miRNA:   3'- uaGGCGgcUAGCUCGCGCu----CGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 56291 0.75 0.084297
Target:  5'- -gCCGCCGAUCGAGCGauaGGCgaGGCu -3'
miRNA:   3'- uaGGCGGCUAGCUCGCgc-UCGggCCG- -5'
12364 5' -62.3 NC_003324.1 + 41721 0.75 0.091462
Target:  5'- -gCCGCCGAcgaGAGCggGCGAGCCgUGGCa -3'
miRNA:   3'- uaGGCGGCUag-CUCG--CGCUCGG-GCCG- -5'
12364 5' -62.3 NC_003324.1 + 41033 0.73 0.122967
Target:  5'- -cUCGCUGuUCGAGUGUGAGCC-GGCg -3'
miRNA:   3'- uaGGCGGCuAGCUCGCGCUCGGgCCG- -5'
12364 5' -62.3 NC_003324.1 + 14533 0.73 0.124284
Target:  5'- gGUCCGCCGAUgcuuggacgccggcaUGGGCccaGAGCCgGGCg -3'
miRNA:   3'- -UAGGCGGCUA---------------GCUCGcg-CUCGGgCCG- -5'
12364 5' -62.3 NC_003324.1 + 17719 0.73 0.126285
Target:  5'- -gUCGUCGAuauccUCGGGCcCGAGCUCGGCg -3'
miRNA:   3'- uaGGCGGCU-----AGCUCGcGCUCGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 52667 0.72 0.159662
Target:  5'- gAUCCGCCGcau--GCGCGAGCguggauggucgauCCGGCg -3'
miRNA:   3'- -UAGGCGGCuagcuCGCGCUCG-------------GGCCG- -5'
12364 5' -62.3 NC_003324.1 + 44576 0.71 0.164301
Target:  5'- -gCCGuCCGAUCGGGaaaugaGGGUCCGGCg -3'
miRNA:   3'- uaGGC-GGCUAGCUCgcg---CUCGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 4554 0.71 0.177574
Target:  5'- -gCCGCgccgUGAUCGAGCGCGcgcaGGUCCaGGCc -3'
miRNA:   3'- uaGGCG----GCUAGCUCGCGC----UCGGG-CCG- -5'
12364 5' -62.3 NC_003324.1 + 54797 0.71 0.177574
Target:  5'- gAUgCGCCGAUCGAGCGUucGaCCGGa -3'
miRNA:   3'- -UAgGCGGCUAGCUCGCGcuCgGGCCg -5'
12364 5' -62.3 NC_003324.1 + 20551 0.7 0.201305
Target:  5'- cUCCGCgaugcggCGAUCGAGCGCGuucucaaugacGGCCgGaGCu -3'
miRNA:   3'- uAGGCG-------GCUAGCUCGCGC-----------UCGGgC-CG- -5'
12364 5' -62.3 NC_003324.1 + 54743 0.7 0.205432
Target:  5'- cAUCUGCCcGUUGGGUGCuucgaggaaggauuGAGCCgGGCg -3'
miRNA:   3'- -UAGGCGGcUAGCUCGCG--------------CUCGGgCCG- -5'
12364 5' -62.3 NC_003324.1 + 5965 0.7 0.21176
Target:  5'- -cCCGCCGAaUGgcuaugcAGCGCGAGCaCGGUg -3'
miRNA:   3'- uaGGCGGCUaGC-------UCGCGCUCGgGCCG- -5'
12364 5' -62.3 NC_003324.1 + 49395 0.69 0.223236
Target:  5'- -cCCGggcaaauacUCGAUCGcGaucgGCGAGCCCGGCa -3'
miRNA:   3'- uaGGC---------GGCUAGCuCg---CGCUCGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 20524 0.69 0.223236
Target:  5'- -cCCGCCGAcCGcaAGCGCccaucAGCgCCGGCa -3'
miRNA:   3'- uaGGCGGCUaGC--UCGCGc----UCG-GGCCG- -5'
12364 5' -62.3 NC_003324.1 + 2836 0.69 0.228885
Target:  5'- uUUCGCCGggCGAGgGgGAGCgucaaCGGCc -3'
miRNA:   3'- uAGGCGGCuaGCUCgCgCUCGg----GCCG- -5'
12364 5' -62.3 NC_003324.1 + 40046 0.69 0.240544
Target:  5'- cGUCgGCCGuccacCGuaguuGCGCGGGUCUGGCc -3'
miRNA:   3'- -UAGgCGGCua---GCu----CGCGCUCGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 18855 0.69 0.252695
Target:  5'- -gUUGCCGAgaUCGAGgagcugcuCGUGGGCuCCGGCg -3'
miRNA:   3'- uaGGCGGCU--AGCUC--------GCGCUCG-GGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.