miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12364 5' -62.3 NC_003324.1 + 18855 0.69 0.252695
Target:  5'- -gUUGCCGAgaUCGAGgagcugcuCGUGGGCuCCGGCg -3'
miRNA:   3'- uaGGCGGCU--AGCUC--------GCGCUCG-GGCCG- -5'
12364 5' -62.3 NC_003324.1 + 54132 0.69 0.252695
Target:  5'- uUCCGCCGcagCGAaagccucuGCGCGccaaucGUCCGGCa -3'
miRNA:   3'- uAGGCGGCua-GCU--------CGCGCu-----CGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 17430 0.69 0.252695
Target:  5'- -cUCGUCGGUCauGAcGCG-GAGCCCGGUg -3'
miRNA:   3'- uaGGCGGCUAG--CU-CGCgCUCGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 14812 0.69 0.258958
Target:  5'- -aUUGCUGAUUGAGUGuCGAGCCCa-- -3'
miRNA:   3'- uaGGCGGCUAGCUCGC-GCUCGGGccg -5'
12364 5' -62.3 NC_003324.1 + 10722 0.68 0.265346
Target:  5'- gGUCuCGCCaGUCGuAGCGacacgGAGCCaCGGCc -3'
miRNA:   3'- -UAG-GCGGcUAGC-UCGCg----CUCGG-GCCG- -5'
12364 5' -62.3 NC_003324.1 + 1591 0.68 0.271862
Target:  5'- -gCCGCCgGAUCcu-CGCuGGCCCGGCc -3'
miRNA:   3'- uaGGCGG-CUAGcucGCGcUCGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 8192 0.68 0.285278
Target:  5'- -aCUGCCcggCG-GCGCGcGCCUGGCa -3'
miRNA:   3'- uaGGCGGcuaGCuCGCGCuCGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 52486 0.68 0.291484
Target:  5'- aGUUCGCCGAUCG-GCuCGAccucguagacuuuGCCgCGGCc -3'
miRNA:   3'- -UAGGCGGCUAGCuCGcGCU-------------CGG-GCCG- -5'
12364 5' -62.3 NC_003324.1 + 24276 0.67 0.313666
Target:  5'- uUCuCGUCGAUCuGGGCacgGCgGAGCuuGGCg -3'
miRNA:   3'- uAG-GCGGCUAG-CUCG---CG-CUCGggCCG- -5'
12364 5' -62.3 NC_003324.1 + 19926 0.67 0.328643
Target:  5'- aAUUCGCCGGUCuGAuaGaCGAGCCCaGUc -3'
miRNA:   3'- -UAGGCGGCUAG-CUcgC-GCUCGGGcCG- -5'
12364 5' -62.3 NC_003324.1 + 40330 0.67 0.328643
Target:  5'- -aCCGCaCGcaaggcggcaGUCGAGCGgGAGCCa-GCa -3'
miRNA:   3'- uaGGCG-GC----------UAGCUCGCgCUCGGgcCG- -5'
12364 5' -62.3 NC_003324.1 + 53654 0.67 0.336327
Target:  5'- -aCCGCCGugcggcaccuUgGAGCGcCGAGCUugauaCGGCg -3'
miRNA:   3'- uaGGCGGCu---------AgCUCGC-GCUCGG-----GCCG- -5'
12364 5' -62.3 NC_003324.1 + 16522 0.67 0.344142
Target:  5'- ---aGCgGAUCGGccuGUGCGuGCUCGGCg -3'
miRNA:   3'- uaggCGgCUAGCU---CGCGCuCGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 18272 0.67 0.344142
Target:  5'- -aCCGCUGAcggaaUCGGccgacGCGCGGGCaaucgcugccCCGGCc -3'
miRNA:   3'- uaGGCGGCU-----AGCU-----CGCGCUCG----------GGCCG- -5'
12364 5' -62.3 NC_003324.1 + 21401 0.67 0.344142
Target:  5'- cGUCCGCgcAUCGAGCGUGuuCuuGGUg -3'
miRNA:   3'- -UAGGCGgcUAGCUCGCGCucGggCCG- -5'
12364 5' -62.3 NC_003324.1 + 26133 0.66 0.352086
Target:  5'- ---aGCCGcgcUUGAGCuaGAGCgCCGGCa -3'
miRNA:   3'- uaggCGGCu--AGCUCGcgCUCG-GGCCG- -5'
12364 5' -62.3 NC_003324.1 + 29666 0.66 0.352086
Target:  5'- uUCUGcCCGAggaaUCGAGCGaCGAGgCCUugaGGCc -3'
miRNA:   3'- uAGGC-GGCU----AGCUCGC-GCUC-GGG---CCG- -5'
12364 5' -62.3 NC_003324.1 + 43687 0.66 0.360159
Target:  5'- uGUCCGagCaGUCGAGCGCGAccGCCaaguaucaGGCc -3'
miRNA:   3'- -UAGGCg-GcUAGCUCGCGCU--CGGg-------CCG- -5'
12364 5' -62.3 NC_003324.1 + 48184 0.66 0.368361
Target:  5'- aGUCCGCU--UCGAGCaGC-AGCCacguCGGCg -3'
miRNA:   3'- -UAGGCGGcuAGCUCG-CGcUCGG----GCCG- -5'
12364 5' -62.3 NC_003324.1 + 45974 0.66 0.368361
Target:  5'- --gCGCCGaAUCGAGgaGCGuGCCCGa- -3'
miRNA:   3'- uagGCGGC-UAGCUCg-CGCuCGGGCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.