miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12364 5' -62.3 NC_003324.1 + 40046 0.69 0.240544
Target:  5'- cGUCgGCCGuccacCGuaguuGCGCGGGUCUGGCc -3'
miRNA:   3'- -UAGgCGGCua---GCu----CGCGCUCGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 2836 0.69 0.228885
Target:  5'- uUUCGCCGggCGAGgGgGAGCgucaaCGGCc -3'
miRNA:   3'- uAGGCGGCuaGCUCgCgCUCGg----GCCG- -5'
12364 5' -62.3 NC_003324.1 + 20524 0.69 0.223236
Target:  5'- -cCCGCCGAcCGcaAGCGCccaucAGCgCCGGCa -3'
miRNA:   3'- uaGGCGGCUaGC--UCGCGc----UCG-GGCCG- -5'
12364 5' -62.3 NC_003324.1 + 49395 0.69 0.223236
Target:  5'- -cCCGggcaaauacUCGAUCGcGaucgGCGAGCCCGGCa -3'
miRNA:   3'- uaGGC---------GGCUAGCuCg---CGCUCGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 8192 0.68 0.285278
Target:  5'- -aCUGCCcggCG-GCGCGcGCCUGGCa -3'
miRNA:   3'- uaGGCGGcuaGCuCGCGCuCGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 10722 0.68 0.265346
Target:  5'- gGUCuCGCCaGUCGuAGCGacacgGAGCCaCGGCc -3'
miRNA:   3'- -UAG-GCGGcUAGC-UCGCg----CUCGG-GCCG- -5'
12364 5' -62.3 NC_003324.1 + 1591 0.68 0.271862
Target:  5'- -gCCGCCgGAUCcu-CGCuGGCCCGGCc -3'
miRNA:   3'- uaGGCGG-CUAGcucGCGcUCGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 52486 0.68 0.291484
Target:  5'- aGUUCGCCGAUCG-GCuCGAccucguagacuuuGCCgCGGCc -3'
miRNA:   3'- -UAGGCGGCUAGCuCGcGCU-------------CGG-GCCG- -5'
12364 5' -62.3 NC_003324.1 + 19926 0.67 0.328643
Target:  5'- aAUUCGCCGGUCuGAuaGaCGAGCCCaGUc -3'
miRNA:   3'- -UAGGCGGCUAG-CUcgC-GCUCGGGcCG- -5'
12364 5' -62.3 NC_003324.1 + 24276 0.67 0.313666
Target:  5'- uUCuCGUCGAUCuGGGCacgGCgGAGCuuGGCg -3'
miRNA:   3'- uAG-GCGGCUAG-CUCG---CG-CUCGggCCG- -5'
12364 5' -62.3 NC_003324.1 + 53654 0.67 0.336327
Target:  5'- -aCCGCCGugcggcaccuUgGAGCGcCGAGCUugauaCGGCg -3'
miRNA:   3'- uaGGCGGCu---------AgCUCGC-GCUCGG-----GCCG- -5'
12364 5' -62.3 NC_003324.1 + 16522 0.67 0.344142
Target:  5'- ---aGCgGAUCGGccuGUGCGuGCUCGGCg -3'
miRNA:   3'- uaggCGgCUAGCU---CGCGCuCGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 18272 0.67 0.344142
Target:  5'- -aCCGCUGAcggaaUCGGccgacGCGCGGGCaaucgcugccCCGGCc -3'
miRNA:   3'- uaGGCGGCU-----AGCU-----CGCGCUCG----------GGCCG- -5'
12364 5' -62.3 NC_003324.1 + 21401 0.67 0.344142
Target:  5'- cGUCCGCgcAUCGAGCGUGuuCuuGGUg -3'
miRNA:   3'- -UAGGCGgcUAGCUCGCGCucGggCCG- -5'
12364 5' -62.3 NC_003324.1 + 40330 0.67 0.328643
Target:  5'- -aCCGCaCGcaaggcggcaGUCGAGCGgGAGCCa-GCa -3'
miRNA:   3'- uaGGCG-GC----------UAGCUCGCgCUCGGgcCG- -5'
12364 5' -62.3 NC_003324.1 + 48184 0.66 0.368361
Target:  5'- aGUCCGCU--UCGAGCaGC-AGCCacguCGGCg -3'
miRNA:   3'- -UAGGCGGcuAGCUCG-CGcUCGG----GCCG- -5'
12364 5' -62.3 NC_003324.1 + 48434 0.66 0.385144
Target:  5'- ---aGCCGGcuUgGAGUGCGAGCaCGGUg -3'
miRNA:   3'- uaggCGGCU--AgCUCGCGCUCGgGCCG- -5'
12364 5' -62.3 NC_003324.1 + 16241 0.66 0.385144
Target:  5'- -cCCGCC--UCGGuGCcaGCGAuGCCUGGCg -3'
miRNA:   3'- uaGGCGGcuAGCU-CG--CGCU-CGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 11842 0.66 0.393724
Target:  5'- uGUCCuGCgCGAcCGGGC-CGGGCaCGGCa -3'
miRNA:   3'- -UAGG-CG-GCUaGCUCGcGCUCGgGCCG- -5'
12364 5' -62.3 NC_003324.1 + 43718 0.66 0.39286
Target:  5'- -aCCGCCugcugccaaucggGAUCaGGGuCGCGAcugugaaagGCCCGGUa -3'
miRNA:   3'- uaGGCGG-------------CUAG-CUC-GCGCU---------CGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.