miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12365 3' -57 NC_003324.1 + 35407 0.7 0.369586
Target:  5'- aGCaACAGCaaCCGCAGCAGC--CgGCGCa -3'
miRNA:   3'- cCG-UGUCG--GGUGUCGUCGaaGgUGCG- -5'
12365 3' -57 NC_003324.1 + 16299 0.69 0.442028
Target:  5'- cGGCACGGCCUGCcccgucGCGGUaucgacaagaaccUUUCugGCg -3'
miRNA:   3'- -CCGUGUCGGGUGu-----CGUCG-------------AAGGugCG- -5'
12365 3' -57 NC_003324.1 + 32808 0.69 0.440096
Target:  5'- cGGCGgGcuuuguuuuuGCCCACacucgaauuauaacGGCAGUgucgUUCCGCGCa -3'
miRNA:   3'- -CCGUgU----------CGGGUG--------------UCGUCG----AAGGUGCG- -5'
12365 3' -57 NC_003324.1 + 8662 0.69 0.442996
Target:  5'- -aCGCGGUCCuCGGCAGUgagCCAgCGCg -3'
miRNA:   3'- ccGUGUCGGGuGUCGUCGaa-GGU-GCG- -5'
12365 3' -57 NC_003324.1 + 2382 0.69 0.45667
Target:  5'- aGGCAUAuucaggaagcagcccGCCCGCAGgGGCgggUCGCGg -3'
miRNA:   3'- -CCGUGU---------------CGGGUGUCgUCGaa-GGUGCg -5'
12365 3' -57 NC_003324.1 + 471 0.69 0.42387
Target:  5'- aGGCAUGGCuUgGCGGUGGUUagCCGCGCc -3'
miRNA:   3'- -CCGUGUCG-GgUGUCGUCGAa-GGUGCG- -5'
12365 3' -57 NC_003324.1 + 35372 0.69 0.442996
Target:  5'- cGGCcugugcugcuGCAGCCUGCu-CGGCcgCCGCGCg -3'
miRNA:   3'- -CCG----------UGUCGGGUGucGUCGaaGGUGCG- -5'
12365 3' -57 NC_003324.1 + 14576 0.69 0.433372
Target:  5'- cGCGCAGUguuggCUGCAcCGGCUUCCGCGa -3'
miRNA:   3'- cCGUGUCG-----GGUGUcGUCGAAGGUGCg -5'
12365 3' -57 NC_003324.1 + 31188 0.69 0.414493
Target:  5'- aGCAgCAGCCgaGCAGCAGCgcauugCCGCa- -3'
miRNA:   3'- cCGU-GUCGGg-UGUCGUCGaa----GGUGcg -5'
12365 3' -57 NC_003324.1 + 46020 0.69 0.414493
Target:  5'- aGGCuuucCAGCCUGCGGCGucgcuugcuucGCUUCCgaagcggcgGCGCc -3'
miRNA:   3'- -CCGu---GUCGGGUGUCGU-----------CGAAGG---------UGCG- -5'
12365 3' -57 NC_003324.1 + 1670 0.69 0.433372
Target:  5'- uGCugAcGCUgACGGCGGUUcgUCCugGCa -3'
miRNA:   3'- cCGugU-CGGgUGUCGUCGA--AGGugCG- -5'
12365 3' -57 NC_003324.1 + 26053 0.69 0.433372
Target:  5'- cGGCGCucuAGCUCAagcGCGGCUU-CGCGCc -3'
miRNA:   3'- -CCGUG---UCGGGUgu-CGUCGAAgGUGCG- -5'
12365 3' -57 NC_003324.1 + 14196 0.69 0.442996
Target:  5'- aGGuCACAGa--ACAGCAGCUuggCUugGCg -3'
miRNA:   3'- -CC-GUGUCgggUGUCGUCGAa--GGugCG- -5'
12365 3' -57 NC_003324.1 + 50443 0.69 0.45274
Target:  5'- uGGUGCAGCUCGCAG-GGCU---GCGCg -3'
miRNA:   3'- -CCGUGUCGGGUGUCgUCGAaggUGCG- -5'
12365 3' -57 NC_003324.1 + 54585 0.69 0.45274
Target:  5'- gGGCGCGGCCga-GGUGGCUgaaCUACGUc -3'
miRNA:   3'- -CCGUGUCGGgugUCGUCGAa--GGUGCG- -5'
12365 3' -57 NC_003324.1 + 7520 0.68 0.4626
Target:  5'- aGCACAGCaCUcggGCAGCAGCacCCuuGCc -3'
miRNA:   3'- cCGUGUCG-GG---UGUCGUCGaaGGugCG- -5'
12365 3' -57 NC_003324.1 + 46404 0.68 0.471569
Target:  5'- cGGCAgAGCCCACcGCgcucgcgAGCUguuccugugUCAUGCg -3'
miRNA:   3'- -CCGUgUCGGGUGuCG-------UCGAa--------GGUGCG- -5'
12365 3' -57 NC_003324.1 + 2742 0.68 0.513481
Target:  5'- cGCGC-GCCCACAGUGGCgcaaucUCC-CGa -3'
miRNA:   3'- cCGUGuCGGGUGUCGUCGa-----AGGuGCg -5'
12365 3' -57 NC_003324.1 + 2700 0.68 0.4626
Target:  5'- gGGCACGauGUCgGCGGCGGCagucUCCAaGCg -3'
miRNA:   3'- -CCGUGU--CGGgUGUCGUCGa---AGGUgCG- -5'
12365 3' -57 NC_003324.1 + 6522 0.68 0.50311
Target:  5'- cGCugAG-CCACGGCAGggUCUGCGa -3'
miRNA:   3'- cCGugUCgGGUGUCGUCgaAGGUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.