miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12365 3' -57 NC_003324.1 + 14500 0.71 0.335327
Target:  5'- cGGUGCAGCCaacacugCGCGGCAGggcgUCCGCGa -3'
miRNA:   3'- -CCGUGUCGG-------GUGUCGUCga--AGGUGCg -5'
12365 3' -57 NC_003324.1 + 14572 0.68 0.481637
Target:  5'- gGGuCGCGGCCUGCcggcgcaAGCGGCcggCgGCGCa -3'
miRNA:   3'- -CC-GUGUCGGGUG-------UCGUCGaa-GgUGCG- -5'
12365 3' -57 NC_003324.1 + 14576 0.69 0.433372
Target:  5'- cGCGCAGUguuggCUGCAcCGGCUUCCGCGa -3'
miRNA:   3'- cCGUGUCG-----GGUGUcGUCGAAGGUGCg -5'
12365 3' -57 NC_003324.1 + 14799 0.75 0.181427
Target:  5'- cGGCgaagaacGCGGCCgGCaucGGCAGCUUCCugGg -3'
miRNA:   3'- -CCG-------UGUCGGgUG---UCGUCGAAGGugCg -5'
12365 3' -57 NC_003324.1 + 15140 0.67 0.545088
Target:  5'- uGCACAGCCUucaucguCAGCccaauGGCgUCCuGCGCc -3'
miRNA:   3'- cCGUGUCGGGu------GUCG-----UCGaAGG-UGCG- -5'
12365 3' -57 NC_003324.1 + 15649 0.67 0.523939
Target:  5'- uGGCgACGGCCC-CGGCGcGCUcgaUgACGCg -3'
miRNA:   3'- -CCG-UGUCGGGuGUCGU-CGAa--GgUGCG- -5'
12365 3' -57 NC_003324.1 + 16130 0.67 0.555767
Target:  5'- cGCAgGGCgCUuCGGUAGCgggggCCGCGCc -3'
miRNA:   3'- cCGUgUCG-GGuGUCGUCGaa---GGUGCG- -5'
12365 3' -57 NC_003324.1 + 16218 0.67 0.555767
Target:  5'- uGGCGCGGCCC-CcGCuaccgaAGCgccCUGCGCa -3'
miRNA:   3'- -CCGUGUCGGGuGuCG------UCGaa-GGUGCG- -5'
12365 3' -57 NC_003324.1 + 16299 0.69 0.442028
Target:  5'- cGGCACGGCCUGCcccgucGCGGUaucgacaagaaccUUUCugGCg -3'
miRNA:   3'- -CCGUGUCGGGUGu-----CGUCG-------------AAGGugCG- -5'
12365 3' -57 NC_003324.1 + 19527 0.67 0.566506
Target:  5'- aGGC---GUCCAuCAGCcGCUUCaCGCGCa -3'
miRNA:   3'- -CCGuguCGGGU-GUCGuCGAAG-GUGCG- -5'
12365 3' -57 NC_003324.1 + 20203 0.67 0.545088
Target:  5'- uGCAUAGCUCuCAaCGGCUUCUcgucgACGCg -3'
miRNA:   3'- cCGUGUCGGGuGUcGUCGAAGG-----UGCG- -5'
12365 3' -57 NC_003324.1 + 20672 0.72 0.297505
Target:  5'- uGGCgACGGCgCCACAGCAccGgaUCC-CGCu -3'
miRNA:   3'- -CCG-UGUCG-GGUGUCGU--CgaAGGuGCG- -5'
12365 3' -57 NC_003324.1 + 20771 0.67 0.577298
Target:  5'- cGGCGCaacggAGCUCGaagAGaCGGCUUCCAaGCa -3'
miRNA:   3'- -CCGUG-----UCGGGUg--UC-GUCGAAGGUgCG- -5'
12365 3' -57 NC_003324.1 + 21067 0.71 0.351744
Target:  5'- cGGCAaacgcugccuuguCGGCCgcCGCGGCgcgugcugcgucGGCUUCCACGUc -3'
miRNA:   3'- -CCGU-------------GUCGG--GUGUCG------------UCGAAGGUGCG- -5'
12365 3' -57 NC_003324.1 + 21083 0.7 0.361013
Target:  5'- cGGCGCGGCCauCAUuGCGGCgaUCCgACGUg -3'
miRNA:   3'- -CCGUGUCGG--GUGuCGUCGa-AGG-UGCG- -5'
12365 3' -57 NC_003324.1 + 21300 0.67 0.577298
Target:  5'- cGCGCcgucGCCUuCGGCAGCUcgaaagCCAgGCg -3'
miRNA:   3'- cCGUGu---CGGGuGUCGUCGAa-----GGUgCG- -5'
12365 3' -57 NC_003324.1 + 23528 0.66 0.609907
Target:  5'- cGGCACGaucgguGcCCCACAGCguggcGGCgggCGCGCu -3'
miRNA:   3'- -CCGUGU------C-GGGUGUCG-----UCGaagGUGCG- -5'
12365 3' -57 NC_003324.1 + 24655 0.7 0.404328
Target:  5'- uGCGCuggucGCCCGCAGCGGUgacgaucUUCCG-GCa -3'
miRNA:   3'- cCGUGu----CGGGUGUCGUCG-------AAGGUgCG- -5'
12365 3' -57 NC_003324.1 + 26053 0.69 0.433372
Target:  5'- cGGCGCucuAGCUCAagcGCGGCUU-CGCGCc -3'
miRNA:   3'- -CCGUG---UCGGGUgu-CGUCGAAgGUGCG- -5'
12365 3' -57 NC_003324.1 + 26731 0.66 0.631755
Target:  5'- gGGCGCgGGCCUuuucuGCAGCAuCUUCCGUGa -3'
miRNA:   3'- -CCGUG-UCGGG-----UGUCGUcGAAGGUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.