Results 21 - 40 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
12365 | 3' | -57 | NC_003324.1 | + | 2275 | 0.67 | 0.577298 |
Target: 5'- aGGUuuuuccuCGGCCCcgugAGCAGCUcCUGCGCu -3' miRNA: 3'- -CCGu------GUCGGGug--UCGUCGAaGGUGCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 20771 | 0.67 | 0.577298 |
Target: 5'- cGGCGCaacggAGCUCGaagAGaCGGCUUCCAaGCa -3' miRNA: 3'- -CCGUG-----UCGGGUg--UC-GUCGAAGGUgCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 21300 | 0.67 | 0.577298 |
Target: 5'- cGCGCcgucGCCUuCGGCAGCUcgaaagCCAgGCg -3' miRNA: 3'- cCGUGu---CGGGuGUCGUCGAa-----GGUgCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 29327 | 0.67 | 0.577298 |
Target: 5'- cGGCGaugcaGGCCCgaACAGCcGCcgUCUugGUg -3' miRNA: 3'- -CCGUg----UCGGG--UGUCGuCGa-AGGugCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 42242 | 0.67 | 0.577298 |
Target: 5'- cGGCaaguacgaucGCGGCCCAUGGUcuguuGCUgaUCCcCGCg -3' miRNA: 3'- -CCG----------UGUCGGGUGUCGu----CGA--AGGuGCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 16218 | 0.67 | 0.555767 |
Target: 5'- uGGCGCGGCCC-CcGCuaccgaAGCgccCUGCGCa -3' miRNA: 3'- -CCGUGUCGGGuGuCG------UCGaa-GGUGCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 31319 | 0.67 | 0.577298 |
Target: 5'- aGUGCGGCCgGCGGC-GCUggCgCugGCg -3' miRNA: 3'- cCGUGUCGGgUGUCGuCGAa-G-GugCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 14432 | 0.67 | 0.566506 |
Target: 5'- uGGauacguCGGCCCGCGcuucuGCAGCUgCCuCGCu -3' miRNA: 3'- -CCgu----GUCGGGUGU-----CGUCGAaGGuGCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 20203 | 0.67 | 0.545088 |
Target: 5'- uGCAUAGCUCuCAaCGGCUUCUcgucgACGCg -3' miRNA: 3'- cCGUGUCGGGuGUcGUCGAAGG-----UGCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 35458 | 0.67 | 0.545088 |
Target: 5'- cGGCcgaGCAGgCUGCAGCAGCacaggccgaCCAgGCa -3' miRNA: 3'- -CCG---UGUCgGGUGUCGUCGaa-------GGUgCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 15140 | 0.67 | 0.545088 |
Target: 5'- uGCACAGCCUucaucguCAGCccaauGGCgUCCuGCGCc -3' miRNA: 3'- cCGUGUCGGGu------GUCG-----UCGaAGG-UGCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 9101 | 0.67 | 0.523939 |
Target: 5'- cGGCAaacGCCUuuGCGGUGGUUccuugcugUCCACGCc -3' miRNA: 3'- -CCGUgu-CGGG--UGUCGUCGA--------AGGUGCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 6127 | 0.67 | 0.555767 |
Target: 5'- cGCGCcuacGCCgAUAGCGGaCUgacCCGCGCc -3' miRNA: 3'- cCGUGu---CGGgUGUCGUC-GAa--GGUGCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 14572 | 0.68 | 0.481637 |
Target: 5'- gGGuCGCGGCCUGCcggcgcaAGCGGCcggCgGCGCa -3' miRNA: 3'- -CC-GUGUCGGGUG-------UCGUCGaa-GgUGCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 31515 | 0.68 | 0.466575 |
Target: 5'- uGGuCGCAGUCCGCcGUccucgucgugagaauGGCcgCCACGCg -3' miRNA: 3'- -CC-GUGUCGGGUGuCG---------------UCGaaGGUGCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 2700 | 0.68 | 0.4626 |
Target: 5'- gGGCACGauGUCgGCGGCGGCagucUCCAaGCg -3' miRNA: 3'- -CCGUGU--CGGgUGUCGUCGa---AGGUgCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 27261 | 0.68 | 0.4626 |
Target: 5'- --aGCGGCCgaACA-CGGCUUCCGCGUu -3' miRNA: 3'- ccgUGUCGGg-UGUcGUCGAAGGUGCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 2742 | 0.68 | 0.513481 |
Target: 5'- cGCGC-GCCCACAGUGGCgcaaucUCC-CGa -3' miRNA: 3'- cCGUGuCGGGUGUCGUCGa-----AGGuGCg -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 13161 | 0.68 | 0.513481 |
Target: 5'- cGGCgGCGGUCgGCGGCGGCgguaCCGgcUGCa -3' miRNA: 3'- -CCG-UGUCGGgUGUCGUCGaa--GGU--GCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 6522 | 0.68 | 0.50311 |
Target: 5'- cGCugAG-CCACGGCAGggUCUGCGa -3' miRNA: 3'- cCGugUCgGGUGUCGUCgaAGGUGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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