Results 41 - 60 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
12365 | 3' | -57 | NC_003324.1 | + | 2700 | 0.68 | 0.4626 |
Target: 5'- gGGCACGauGUCgGCGGCGGCagucUCCAaGCg -3' miRNA: 3'- -CCGUGU--CGGgUGUCGUCGa---AGGUgCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 31515 | 0.68 | 0.466575 |
Target: 5'- uGGuCGCAGUCCGCcGUccucgucgugagaauGGCcgCCACGCg -3' miRNA: 3'- -CC-GUGUCGGGUGuCG---------------UCGaaGGUGCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 14572 | 0.68 | 0.481637 |
Target: 5'- gGGuCGCGGCCUGCcggcgcaAGCGGCcggCgGCGCa -3' miRNA: 3'- -CC-GUGUCGGGUG-------UCGUCGaa-GgUGCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 6522 | 0.68 | 0.50311 |
Target: 5'- cGCugAG-CCACGGCAGggUCUGCGa -3' miRNA: 3'- cCGugUCgGGUGUCGUCgaAGGUGCg -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 2742 | 0.68 | 0.513481 |
Target: 5'- cGCGC-GCCCACAGUGGCgcaaucUCC-CGa -3' miRNA: 3'- cCGUGuCGGGUGUCGUCGa-----AGGuGCg -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 16299 | 0.69 | 0.442028 |
Target: 5'- cGGCACGGCCUGCcccgucGCGGUaucgacaagaaccUUUCugGCg -3' miRNA: 3'- -CCGUGUCGGGUGu-----CGUCG-------------AAGGugCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 8662 | 0.69 | 0.442996 |
Target: 5'- -aCGCGGUCCuCGGCAGUgagCCAgCGCg -3' miRNA: 3'- ccGUGUCGGGuGUCGUCGaa-GGU-GCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 31188 | 0.69 | 0.414493 |
Target: 5'- aGCAgCAGCCgaGCAGCAGCgcauugCCGCa- -3' miRNA: 3'- cCGU-GUCGGg-UGUCGUCGaa----GGUGcg -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 32808 | 0.69 | 0.440096 |
Target: 5'- cGGCGgGcuuuguuuuuGCCCACacucgaauuauaacGGCAGUgucgUUCCGCGCa -3' miRNA: 3'- -CCGUgU----------CGGGUG--------------UCGUCG----AAGGUGCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 14576 | 0.69 | 0.433372 |
Target: 5'- cGCGCAGUguuggCUGCAcCGGCUUCCGCGa -3' miRNA: 3'- cCGUGUCG-----GGUGUcGUCGAAGGUGCg -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 471 | 0.69 | 0.42387 |
Target: 5'- aGGCAUGGCuUgGCGGUGGUUagCCGCGCc -3' miRNA: 3'- -CCGUGUCG-GgUGUCGUCGAa-GGUGCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 54585 | 0.69 | 0.45274 |
Target: 5'- gGGCGCGGCCga-GGUGGCUgaaCUACGUc -3' miRNA: 3'- -CCGUGUCGGgugUCGUCGAa--GGUGCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 50443 | 0.69 | 0.45274 |
Target: 5'- uGGUGCAGCUCGCAG-GGCU---GCGCg -3' miRNA: 3'- -CCGUGUCGGGUGUCgUCGAaggUGCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 35372 | 0.69 | 0.442996 |
Target: 5'- cGGCcugugcugcuGCAGCCUGCu-CGGCcgCCGCGCg -3' miRNA: 3'- -CCG----------UGUCGGGUGucGUCGaaGGUGCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 14196 | 0.69 | 0.442996 |
Target: 5'- aGGuCACAGa--ACAGCAGCUuggCUugGCg -3' miRNA: 3'- -CC-GUGUCgggUGUCGUCGAa--GGugCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 26053 | 0.69 | 0.433372 |
Target: 5'- cGGCGCucuAGCUCAagcGCGGCUU-CGCGCc -3' miRNA: 3'- -CCGUG---UCGGGUgu-CGUCGAAgGUGCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 1670 | 0.69 | 0.433372 |
Target: 5'- uGCugAcGCUgACGGCGGUUcgUCCugGCa -3' miRNA: 3'- cCGugU-CGGgUGUCGUCGA--AGGugCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 2382 | 0.69 | 0.45667 |
Target: 5'- aGGCAUAuucaggaagcagcccGCCCGCAGgGGCgggUCGCGg -3' miRNA: 3'- -CCGUGU---------------CGGGUGUCgUCGaa-GGUGCg -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 46020 | 0.69 | 0.414493 |
Target: 5'- aGGCuuucCAGCCUGCGGCGucgcuugcuucGCUUCCgaagcggcgGCGCc -3' miRNA: 3'- -CCGu---GUCGGGUGUCGU-----------CGAAGG---------UGCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 42664 | 0.7 | 0.405246 |
Target: 5'- cGuCACGGCCUACAGCgaGGCUgCCG-GCa -3' miRNA: 3'- cC-GUGUCGGGUGUCG--UCGAaGGUgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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