Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12366 | 5' | -57.5 | NC_003324.1 | + | 31120 | 1.11 | 0.000491 |
Target: 5'- aGCAGGAGUUGAACGCCGACCGCGCCGg -3' miRNA: 3'- -CGUCCUCAACUUGCGGCUGGCGCGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 16332 | 0.75 | 0.190626 |
Target: 5'- cGCGGGuuuGUUaGGgcccuGCGCUGGCCGCGUCGg -3' miRNA: 3'- -CGUCCu--CAA-CU-----UGCGGCUGGCGCGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 52387 | 0.75 | 0.195674 |
Target: 5'- uGCuGGGGUcGcaGACGCCGGCCGCcCCGa -3' miRNA: 3'- -CGuCCUCAaC--UUGCGGCUGGCGcGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 54603 | 0.75 | 0.195674 |
Target: 5'- aCAGGAacgGAACGCCGGUCGCGCUGc -3' miRNA: 3'- cGUCCUcaaCUUGCGGCUGGCGCGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 23907 | 0.74 | 0.217049 |
Target: 5'- cGCAGGuuugccGUaGAGCGCCGACaugGCGUCGa -3' miRNA: 3'- -CGUCCu-----CAaCUUGCGGCUGg--CGCGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 14230 | 0.73 | 0.272471 |
Target: 5'- uCAGGcaAGUUGGGCgaagGCUGACCGCGaCCGc -3' miRNA: 3'- cGUCC--UCAACUUG----CGGCUGGCGC-GGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 17737 | 0.73 | 0.279286 |
Target: 5'- aGCAGG--UUGAA-GCCGAUUGUGCCGg -3' miRNA: 3'- -CGUCCucAACUUgCGGCUGGCGCGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 43790 | 0.72 | 0.29332 |
Target: 5'- aGCAGG-GUgccggGAACGCCGGCaagGCGCg- -3' miRNA: 3'- -CGUCCuCAa----CUUGCGGCUGg--CGCGgc -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 38379 | 0.72 | 0.315394 |
Target: 5'- uGCGGGAGgaagUGGugGCCGAacacguauCCgguGCGCUGg -3' miRNA: 3'- -CGUCCUCa---ACUugCGGCU--------GG---CGCGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 9584 | 0.72 | 0.323025 |
Target: 5'- uGCAu--GUUGGugcCGCCGGCCGUGCCa -3' miRNA: 3'- -CGUccuCAACUu--GCGGCUGGCGCGGc -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 56775 | 0.72 | 0.323025 |
Target: 5'- gGCAGGAGgUGGA-GCCGGuaagCGUGCCGg -3' miRNA: 3'- -CGUCCUCaACUUgCGGCUg---GCGCGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 7645 | 0.7 | 0.397805 |
Target: 5'- cGC-GGAGUc--GCGCCGGCaGUGCCGg -3' miRNA: 3'- -CGuCCUCAacuUGCGGCUGgCGCGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 5187 | 0.7 | 0.406774 |
Target: 5'- gGCAGGAaaaagcggcGcaGAuCGUCGAUCGCGCCGc -3' miRNA: 3'- -CGUCCU---------CaaCUuGCGGCUGGCGCGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 42282 | 0.7 | 0.415868 |
Target: 5'- cGCGGGucg-GcAACGCUGAgUGCGCCGc -3' miRNA: 3'- -CGUCCucaaC-UUGCGGCUgGCGCGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 46736 | 0.69 | 0.425085 |
Target: 5'- -aGGGAGagcacgGGGCGCCGAggugugccCCGCGCUa -3' miRNA: 3'- cgUCCUCaa----CUUGCGGCU--------GGCGCGGc -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 3158 | 0.69 | 0.453449 |
Target: 5'- gGCAaGAGcggGAGCGCCGugCG-GCCa -3' miRNA: 3'- -CGUcCUCaa-CUUGCGGCugGCgCGGc -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 29367 | 0.69 | 0.453449 |
Target: 5'- aGCAGGAGcUGGAacgcaaucCGCCGAUCGaGCgCGa -3' miRNA: 3'- -CGUCCUCaACUU--------GCGGCUGGCgCG-GC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 14642 | 0.69 | 0.453449 |
Target: 5'- gGCAGGccgcgacccauGUUGAccACGUCGGCCuugaGCGCCa -3' miRNA: 3'- -CGUCCu----------CAACU--UGCGGCUGG----CGCGGc -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 22145 | 0.69 | 0.463131 |
Target: 5'- aGCAGGAGaaGGGCGCCGACaacaUGCUc -3' miRNA: 3'- -CGUCCUCaaCUUGCGGCUGgc--GCGGc -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 56431 | 0.69 | 0.463131 |
Target: 5'- uGCAGGAGagggGAAggUGCCGGaagaCGCGaCCGa -3' miRNA: 3'- -CGUCCUCaa--CUU--GCGGCUg---GCGC-GGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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