miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12366 5' -57.5 NC_003324.1 + 13072 0.66 0.6505
Target:  5'- uGCAGccGGUaccgccgcCGCCGACCGCcGCCGa -3'
miRNA:   3'- -CGUCc-UCAacuu----GCGGCUGGCG-CGGC- -5'
12366 5' -57.5 NC_003324.1 + 8036 0.68 0.533653
Target:  5'- gGCAuGGAGUUGAACGCac-UgGCGCUc -3'
miRNA:   3'- -CGU-CCUCAACUUGCGgcuGgCGCGGc -5'
12366 5' -57.5 NC_003324.1 + 7008 0.67 0.544059
Target:  5'- cGCAGGuccUGcucuacGCGCCGaACUGCGCUGa -3'
miRNA:   3'- -CGUCCucaACu-----UGCGGC-UGGCGCGGC- -5'
12366 5' -57.5 NC_003324.1 + 48665 0.67 0.544059
Target:  5'- cCAGGAG----ACGCUGGCUGCGCa- -3'
miRNA:   3'- cGUCCUCaacuUGCGGCUGGCGCGgc -5'
12366 5' -57.5 NC_003324.1 + 16112 0.67 0.575644
Target:  5'- uGCAGcGAGgUGGuccugcgcaggGCGCUucgguagcgggGGCCGCGCCa -3'
miRNA:   3'- -CGUC-CUCaACU-----------UGCGG-----------CUGGCGCGGc -5'
12366 5' -57.5 NC_003324.1 + 48703 0.67 0.575644
Target:  5'- aGCAGGuccaGAaauacgaaaaggGCGCCaACCGCGUCGg -3'
miRNA:   3'- -CGUCCucaaCU------------UGCGGcUGGCGCGGC- -5'
12366 5' -57.5 NC_003324.1 + 30749 0.66 0.596932
Target:  5'- uCGGGAGUgacggaagcacGGGCGCgGucCUGCGCCGu -3'
miRNA:   3'- cGUCCUCAa----------CUUGCGgCu-GGCGCGGC- -5'
12366 5' -57.5 NC_003324.1 + 8315 0.66 0.607623
Target:  5'- cGCAGG-GU--AACGCCGuCgGCGCuCGu -3'
miRNA:   3'- -CGUCCuCAacUUGCGGCuGgCGCG-GC- -5'
12366 5' -57.5 NC_003324.1 + 30662 0.66 0.607623
Target:  5'- --cGGAGauagcuGCGCgGAUCGCGCCa -3'
miRNA:   3'- cguCCUCaacu--UGCGgCUGGCGCGGc -5'
12366 5' -57.5 NC_003324.1 + 20494 0.68 0.51
Target:  5'- aGCGGGAuGUugcgauUGAGCgagggcgugcccGCCGACCGCaagcgcccaucagcGCCGg -3'
miRNA:   3'- -CGUCCU-CA------ACUUG------------CGGCUGGCG--------------CGGC- -5'
12366 5' -57.5 NC_003324.1 + 20366 0.68 0.482812
Target:  5'- uGCcGGuGcucUUGcuauCGCCGGCCGUGCCGu -3'
miRNA:   3'- -CGuCCuC---AACuu--GCGGCUGGCGCGGC- -5'
12366 5' -57.5 NC_003324.1 + 56431 0.69 0.463131
Target:  5'- uGCAGGAGagggGAAggUGCCGGaagaCGCGaCCGa -3'
miRNA:   3'- -CGUCCUCaa--CUU--GCGGCUg---GCGC-GGC- -5'
12366 5' -57.5 NC_003324.1 + 14230 0.73 0.272471
Target:  5'- uCAGGcaAGUUGGGCgaagGCUGACCGCGaCCGc -3'
miRNA:   3'- cGUCC--UCAACUUG----CGGCUGGCGC-GGC- -5'
12366 5' -57.5 NC_003324.1 + 17737 0.73 0.279286
Target:  5'- aGCAGG--UUGAA-GCCGAUUGUGCCGg -3'
miRNA:   3'- -CGUCCucAACUUgCGGCUGGCGCGGC- -5'
12366 5' -57.5 NC_003324.1 + 43790 0.72 0.29332
Target:  5'- aGCAGG-GUgccggGAACGCCGGCaagGCGCg- -3'
miRNA:   3'- -CGUCCuCAa----CUUGCGGCUGg--CGCGgc -5'
12366 5' -57.5 NC_003324.1 + 38379 0.72 0.315394
Target:  5'- uGCGGGAGgaagUGGugGCCGAacacguauCCgguGCGCUGg -3'
miRNA:   3'- -CGUCCUCa---ACUugCGGCU--------GG---CGCGGC- -5'
12366 5' -57.5 NC_003324.1 + 56775 0.72 0.323025
Target:  5'- gGCAGGAGgUGGA-GCCGGuaagCGUGCCGg -3'
miRNA:   3'- -CGUCCUCaACUUgCGGCUg---GCGCGGC- -5'
12366 5' -57.5 NC_003324.1 + 7645 0.7 0.397805
Target:  5'- cGC-GGAGUc--GCGCCGGCaGUGCCGg -3'
miRNA:   3'- -CGuCCUCAacuUGCGGCUGgCGCGGC- -5'
12366 5' -57.5 NC_003324.1 + 42282 0.7 0.415868
Target:  5'- cGCGGGucg-GcAACGCUGAgUGCGCCGc -3'
miRNA:   3'- -CGUCCucaaC-UUGCGGCUgGCGCGGC- -5'
12366 5' -57.5 NC_003324.1 + 46736 0.69 0.425085
Target:  5'- -aGGGAGagcacgGGGCGCCGAggugugccCCGCGCUa -3'
miRNA:   3'- cgUCCUCaa----CUUGCGGCU--------GGCGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.