Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12366 | 5' | -57.5 | NC_003324.1 | + | 265 | 0.68 | 0.482812 |
Target: 5'- aCAGGA---GAGCGCUauGGCgCGCGCCGu -3' miRNA: 3'- cGUCCUcaaCUUGCGG--CUG-GCGCGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 3158 | 0.69 | 0.453449 |
Target: 5'- gGCAaGAGcggGAGCGCCGugCG-GCCa -3' miRNA: 3'- -CGUcCUCaa-CUUGCGGCugGCgCGGc -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 5187 | 0.7 | 0.406774 |
Target: 5'- gGCAGGAaaaagcggcGcaGAuCGUCGAUCGCGCCGc -3' miRNA: 3'- -CGUCCU---------CaaCUuGCGGCUGGCGCGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 7008 | 0.67 | 0.544059 |
Target: 5'- cGCAGGuccUGcucuacGCGCCGaACUGCGCUGa -3' miRNA: 3'- -CGUCCucaACu-----UGCGGC-UGGCGCGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 7645 | 0.7 | 0.397805 |
Target: 5'- cGC-GGAGUc--GCGCCGGCaGUGCCGg -3' miRNA: 3'- -CGuCCUCAacuUGCGGCUGgCGCGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 8036 | 0.68 | 0.533653 |
Target: 5'- gGCAuGGAGUUGAACGCac-UgGCGCUc -3' miRNA: 3'- -CGU-CCUCAACUUGCGgcuGgCGCGGc -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 8315 | 0.66 | 0.607623 |
Target: 5'- cGCAGG-GU--AACGCCGuCgGCGCuCGu -3' miRNA: 3'- -CGUCCuCAacUUGCGGCuGgCGCG-GC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 9584 | 0.72 | 0.323025 |
Target: 5'- uGCAu--GUUGGugcCGCCGGCCGUGCCa -3' miRNA: 3'- -CGUccuCAACUu--GCGGCUGGCGCGGc -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 13072 | 0.66 | 0.6505 |
Target: 5'- uGCAGccGGUaccgccgcCGCCGACCGCcGCCGa -3' miRNA: 3'- -CGUCc-UCAacuu----GCGGCUGGCG-CGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 13095 | 0.66 | 0.6505 |
Target: 5'- gGCGGGcGUUGAugcCGCCcugcaGAUCGCcaGCCGc -3' miRNA: 3'- -CGUCCuCAACUu--GCGG-----CUGGCG--CGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 14230 | 0.73 | 0.272471 |
Target: 5'- uCAGGcaAGUUGGGCgaagGCUGACCGCGaCCGc -3' miRNA: 3'- cGUCC--UCAACUUG----CGGCUGGCGC-GGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 14642 | 0.69 | 0.453449 |
Target: 5'- gGCAGGccgcgacccauGUUGAccACGUCGGCCuugaGCGCCa -3' miRNA: 3'- -CGUCCu----------CAACU--UGCGGCUGG----CGCGGc -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 14890 | 0.68 | 0.523318 |
Target: 5'- cCAGGaAGcUGccGAUGCCGGCCGCGUUc -3' miRNA: 3'- cGUCC-UCaAC--UUGCGGCUGGCGCGGc -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 14990 | 0.66 | 0.6505 |
Target: 5'- gGCAuGuuGUUGAccGCGUCGAgCGCGUCGc -3' miRNA: 3'- -CGU-CcuCAACU--UGCGGCUgGCGCGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 16112 | 0.67 | 0.575644 |
Target: 5'- uGCAGcGAGgUGGuccugcgcaggGCGCUucgguagcgggGGCCGCGCCa -3' miRNA: 3'- -CGUC-CUCaACU-----------UGCGG-----------CUGGCGCGGc -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 16332 | 0.75 | 0.190626 |
Target: 5'- cGCGGGuuuGUUaGGgcccuGCGCUGGCCGCGUCGg -3' miRNA: 3'- -CGUCCu--CAA-CU-----UGCGGCUGGCGCGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 17737 | 0.73 | 0.279286 |
Target: 5'- aGCAGG--UUGAA-GCCGAUUGUGCCGg -3' miRNA: 3'- -CGUCCucAACUUgCGGCUGGCGCGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 18174 | 0.66 | 0.627984 |
Target: 5'- -uGGGGGUcaucucgUGGAUGuUCcACCGCGCCGa -3' miRNA: 3'- cgUCCUCA-------ACUUGC-GGcUGGCGCGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 18899 | 0.68 | 0.533653 |
Target: 5'- --uGGAGacuGGCGCCGaccuucGCCGCGCCa -3' miRNA: 3'- cguCCUCaacUUGCGGC------UGGCGCGGc -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 20366 | 0.68 | 0.482812 |
Target: 5'- uGCcGGuGcucUUGcuauCGCCGGCCGUGCCGu -3' miRNA: 3'- -CGuCCuC---AACuu--GCGGCUGGCGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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