Results 61 - 65 of 65 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 12369 | 5' | -62.4 | NC_003324.1 | + | 34900 | 0.66 | 0.398372 |
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Target: 5'- aCGgCGA-GCUGCaGGCGAAGGaGAUGc -3' miRNA: 3'- -GCgGCUcCGACGgCCGCUUCCgCUGC- -5' |
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| 12369 | 5' | -62.4 | NC_003324.1 | + | 53675 | 0.66 | 0.407092 |
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Target: 5'- gCGCCGAGcUUGauaCGGCGAaacAGGCGcUGg -3' miRNA: 3'- -GCGGCUCcGACg--GCCGCU---UCCGCuGC- -5' |
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| 12369 | 5' | -62.4 | NC_003324.1 | + | 44435 | 0.66 | 0.407092 |
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Target: 5'- gCGCCGAGacuucggucGCUgaugGCCGGCGuuugaaacGGCGAUu -3' miRNA: 3'- -GCGGCUC---------CGA----CGGCCGCuu------CCGCUGc -5' |
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| 12369 | 5' | -62.4 | NC_003324.1 | + | 20786 | 0.66 | 0.407092 |
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Target: 5'- cCGCCGGaac-GuuGGCG-AGGCGGCGg -3' miRNA: 3'- -GCGGCUccgaCggCCGCuUCCGCUGC- -5' |
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| 12369 | 5' | -62.4 | NC_003324.1 | + | 11574 | 0.66 | 0.407092 |
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Target: 5'- aGCCGAugcugcucccgcGGCuccUGCCGGaGAcuGGuGCGACGg -3' miRNA: 3'- gCGGCU------------CCG---ACGGCCgCU--UC-CGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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