miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12370 3' -55.4 NC_003324.1 + 54873 0.66 0.715832
Target:  5'- ---cAGGCCCGgaugcUCGCGAugucggcGCCCGCa- -3'
miRNA:   3'- guauUCCGGGC-----AGUGUUu------CGGGCGgu -5'
12370 3' -55.4 NC_003324.1 + 4587 0.66 0.715832
Target:  5'- --cGAGGCCUuaguaGUCGCGucGCC-GCCGu -3'
miRNA:   3'- guaUUCCGGG-----CAGUGUuuCGGgCGGU- -5'
12370 3' -55.4 NC_003324.1 + 10260 0.66 0.705023
Target:  5'- --gAAGGUCCGg-ACAAAGCUguaGCCAu -3'
miRNA:   3'- guaUUCCGGGCagUGUUUCGGg--CGGU- -5'
12370 3' -55.4 NC_003324.1 + 55131 0.66 0.705023
Target:  5'- -----uGCgCCGUCGCGGcAGCCCaGCCGu -3'
miRNA:   3'- guauucCG-GGCAGUGUU-UCGGG-CGGU- -5'
12370 3' -55.4 NC_003324.1 + 21441 0.66 0.705023
Target:  5'- -cUAAGGCCCGguUCAUccagcAGGUCCGCa- -3'
miRNA:   3'- guAUUCCGGGC--AGUGu----UUCGGGCGgu -5'
12370 3' -55.4 NC_003324.1 + 43919 0.66 0.694142
Target:  5'- ----uGGCgCCGgCACcGAGCCCGCa- -3'
miRNA:   3'- guauuCCG-GGCaGUGuUUCGGGCGgu -5'
12370 3' -55.4 NC_003324.1 + 18099 0.66 0.694142
Target:  5'- ----uGGCCCGUgGC---GCCgGCCAa -3'
miRNA:   3'- guauuCCGGGCAgUGuuuCGGgCGGU- -5'
12370 3' -55.4 NC_003324.1 + 53886 0.66 0.67221
Target:  5'- aAUGGGGCCUGgugCGC----CCCGCCGc -3'
miRNA:   3'- gUAUUCCGGGCa--GUGuuucGGGCGGU- -5'
12370 3' -55.4 NC_003324.1 + 14482 0.67 0.650125
Target:  5'- ----uGGCaCCGUCGCGgAAGCCggugcaGCCAa -3'
miRNA:   3'- guauuCCG-GGCAGUGU-UUCGGg-----CGGU- -5'
12370 3' -55.4 NC_003324.1 + 31152 0.67 0.650125
Target:  5'- ---cAGGCCUGccUCGCGGAGCUgcccggccugCGCCAu -3'
miRNA:   3'- guauUCCGGGC--AGUGUUUCGG----------GCGGU- -5'
12370 3' -55.4 NC_003324.1 + 32921 0.67 0.643482
Target:  5'- --aAAGGCgCGUCagugGCGAugaucgaggcggcuGCCCGCCAu -3'
miRNA:   3'- guaUUCCGgGCAG----UGUUu-------------CGGGCGGU- -5'
12370 3' -55.4 NC_003324.1 + 32731 0.67 0.627972
Target:  5'- ---uGGGCaaaa-ACAAAGCCCGCCGa -3'
miRNA:   3'- guauUCCGggcagUGUUUCGGGCGGU- -5'
12370 3' -55.4 NC_003324.1 + 25175 0.67 0.616896
Target:  5'- ---cGGGCgCCGUCGCGcAGCUCaCCAg -3'
miRNA:   3'- guauUCCG-GGCAGUGUuUCGGGcGGU- -5'
12370 3' -55.4 NC_003324.1 + 18480 0.68 0.594794
Target:  5'- uCGUGuGGUUCcUCGCAGGGUCCGUCAg -3'
miRNA:   3'- -GUAUuCCGGGcAGUGUUUCGGGCGGU- -5'
12370 3' -55.4 NC_003324.1 + 14058 0.68 0.583787
Target:  5'- ----cGGCCCGUUAUAGcguuguccGGCCCGUUu -3'
miRNA:   3'- guauuCCGGGCAGUGUU--------UCGGGCGGu -5'
12370 3' -55.4 NC_003324.1 + 16308 0.68 0.561903
Target:  5'- ----uGGCCgCGUCgGCAcGGCCUGCCc -3'
miRNA:   3'- guauuCCGG-GCAG-UGUuUCGGGCGGu -5'
12370 3' -55.4 NC_003324.1 + 616 0.68 0.561903
Target:  5'- aCAUcAAGGCCUGgcaGCuGGGCuuGCCAu -3'
miRNA:   3'- -GUA-UUCCGGGCag-UGuUUCGggCGGU- -5'
12370 3' -55.4 NC_003324.1 + 8303 0.68 0.561903
Target:  5'- uCGUGAcGCCCGUCACAGagauGGUCgaagUGCCAg -3'
miRNA:   3'- -GUAUUcCGGGCAGUGUU----UCGG----GCGGU- -5'
12370 3' -55.4 NC_003324.1 + 23426 0.69 0.529525
Target:  5'- aAUGAcGCCCGcCGCGacGAGCUCGUCAg -3'
miRNA:   3'- gUAUUcCGGGCaGUGU--UUCGGGCGGU- -5'
12370 3' -55.4 NC_003324.1 + 36441 0.7 0.447092
Target:  5'- cCGUAGGGCaugCCGUCGC---GCCCGCg- -3'
miRNA:   3'- -GUAUUCCG---GGCAGUGuuuCGGGCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.