miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12372 5' -52.5 NC_003324.1 + 18885 0.67 0.820844
Target:  5'- --gACCUUCGCCGCgccaUGGAccCGCGCa -3'
miRNA:   3'- gagUGGGAGCGGUG----AUUUuaGCGCGg -5'
12372 5' -52.5 NC_003324.1 + 19263 0.66 0.847917
Target:  5'- aUCGCCCagCGCCGCgcagAGGAcCGCuaCa -3'
miRNA:   3'- gAGUGGGa-GCGGUGa---UUUUaGCGcgG- -5'
12372 5' -52.5 NC_003324.1 + 20992 0.67 0.801759
Target:  5'- gCUCACgUcggaUCGCCGCaauGAUggcCGCGCCg -3'
miRNA:   3'- -GAGUGgG----AGCGGUGauuUUA---GCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 21142 0.68 0.751053
Target:  5'- uCUCGgCCUCGUCAgUGAgcGAgcgggCGCGCg -3'
miRNA:   3'- -GAGUgGGAGCGGUgAUU--UUa----GCGCGg -5'
12372 5' -52.5 NC_003324.1 + 23259 0.7 0.675177
Target:  5'- gUCGCCCaccUUGCCcggaagGCUcAGAUgCGCGCCg -3'
miRNA:   3'- gAGUGGG---AGCGG------UGAuUUUA-GCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 23379 0.68 0.777902
Target:  5'- -cCACUUUCGCCACUccgcuuugaCGCGCUc -3'
miRNA:   3'- gaGUGGGAGCGGUGAuuuua----GCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 23620 0.71 0.59832
Target:  5'- -gCGCCCgcCGCCACgcuguggggcaccGAUCGUGCCg -3'
miRNA:   3'- gaGUGGGa-GCGGUGauu----------UUAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 23660 0.66 0.864818
Target:  5'- cCUCGauaugCUUCGCCGgUAuccacggCGCGCCg -3'
miRNA:   3'- -GAGUg----GGAGCGGUgAUuuua---GCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 24372 0.68 0.755243
Target:  5'- -aCGCCUUCGCCAagcuccgcCGUGCCc -3'
miRNA:   3'- gaGUGGGAGCGGUgauuuua-GCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 25335 0.68 0.791937
Target:  5'- aUCGCCCgUCGCCuugGCUuuAAggGCgGCCa -3'
miRNA:   3'- gAGUGGG-AGCGG---UGAuuUUagCG-CGG- -5'
12372 5' -52.5 NC_003324.1 + 25403 0.66 0.856489
Target:  5'- cCUCugCCgaaUCGuCCACcAGAAaCGCGCa -3'
miRNA:   3'- -GAGugGG---AGC-GGUGaUUUUaGCGCGg -5'
12372 5' -52.5 NC_003324.1 + 26718 0.76 0.33026
Target:  5'- gUCACCCUCGCCGgCUAccauaucgaGAAggGUGCCc -3'
miRNA:   3'- gAGUGGGAGCGGU-GAU---------UUUagCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 27358 0.68 0.76149
Target:  5'- gUgGCCgUCGCUGCgguacuUCGUGCCg -3'
miRNA:   3'- gAgUGGgAGCGGUGauuuu-AGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 27792 0.7 0.652948
Target:  5'- aCUCGCCCaacgUCGUCggACU--GAUgGCGCCg -3'
miRNA:   3'- -GAGUGGG----AGCGG--UGAuuUUAgCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 28617 0.74 0.448254
Target:  5'- gUCGCCCUCGUgGCccGGAUCGUugcggGCCg -3'
miRNA:   3'- gAGUGGGAGCGgUGauUUUAGCG-----CGG- -5'
12372 5' -52.5 NC_003324.1 + 29782 0.7 0.630638
Target:  5'- gCUCcaauCCCUCGgcguCCACacgcacAGUCGCGCCa -3'
miRNA:   3'- -GAGu---GGGAGC----GGUGauu---UUAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 29978 0.68 0.740491
Target:  5'- aUgGCCagcagcgCGCCG--AAGAUCGCGCCg -3'
miRNA:   3'- gAgUGGga-----GCGGUgaUUUUAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 30640 0.67 0.829171
Target:  5'- -gCAUgaUCGCCGCUGGAGUagagcagCGCGUCg -3'
miRNA:   3'- gaGUGggAGCGGUGAUUUUA-------GCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 30649 0.72 0.564052
Target:  5'- uUC-CCCgaCGCCACgGAgauagcugcgcgGAUCGCGCCa -3'
miRNA:   3'- gAGuGGGa-GCGGUGaUU------------UUAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 31344 0.66 0.847917
Target:  5'- --aGCCgUCGCCGCcgcAAAAaCGCGCa -3'
miRNA:   3'- gagUGGgAGCGGUGa--UUUUaGCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.