miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12372 5' -52.5 NC_003324.1 + 31631 0.71 0.594987
Target:  5'- -gCACCCacUCGCgCACUuccuucggCGCGCCg -3'
miRNA:   3'- gaGUGGG--AGCG-GUGAuuuua---GCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 32084 0.67 0.799809
Target:  5'- uUCGgCCUCGCUGCgccucggcUCGuCGCCg -3'
miRNA:   3'- gAGUgGGAGCGGUGauuuu---AGC-GCGG- -5'
12372 5' -52.5 NC_003324.1 + 32835 0.75 0.400089
Target:  5'- -cCGCCUcgaucaUCGCCACUGA---CGCGCCu -3'
miRNA:   3'- gaGUGGG------AGCGGUGAUUuuaGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 33618 1 0.00873
Target:  5'- aCUCACCCUCGCCACUAAAAUCG-GCCc -3'
miRNA:   3'- -GAGUGGGAGCGGUGAUUUUAGCgCGG- -5'
12372 5' -52.5 NC_003324.1 + 33855 0.67 0.830085
Target:  5'- gCUCACCaUUUGCCGCggugacugGGAGaCGUGCUg -3'
miRNA:   3'- -GAGUGG-GAGCGGUGa-------UUUUaGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 35149 0.69 0.719042
Target:  5'- -gCGCCUUCGUCACcu---UCGgCGCCg -3'
miRNA:   3'- gaGUGGGAGCGGUGauuuuAGC-GCGG- -5'
12372 5' -52.5 NC_003324.1 + 35417 0.68 0.740491
Target:  5'- cCUCGCCCUCGgUGCggGAGAcgaacccggcuUCGUGCa -3'
miRNA:   3'- -GAGUGGGAGCgGUGa-UUUU-----------AGCGCGg -5'
12372 5' -52.5 NC_003324.1 + 36719 0.71 0.604994
Target:  5'- -gCACCUUCGCCGggGAAaucuaugacccgcuAUCGCGCg -3'
miRNA:   3'- gaGUGGGAGCGGUgaUUU--------------UAGCGCGg -5'
12372 5' -52.5 NC_003324.1 + 36842 0.75 0.400089
Target:  5'- aUCGCCCUCGUCgauGCUGcgcucAAUCaGCGCCu -3'
miRNA:   3'- gAGUGGGAGCGG---UGAUu----UUAG-CGCGG- -5'
12372 5' -52.5 NC_003324.1 + 37018 0.66 0.880723
Target:  5'- uUCGCCCUCGUCA------UCGC-CCu -3'
miRNA:   3'- gAGUGGGAGCGGUgauuuuAGCGcGG- -5'
12372 5' -52.5 NC_003324.1 + 38688 0.71 0.608334
Target:  5'- gUCAUCCUCGCCAagcagaUGucAAUCGC-CCg -3'
miRNA:   3'- gAGUGGGAGCGGUg-----AUu-UUAGCGcGG- -5'
12372 5' -52.5 NC_003324.1 + 38692 0.69 0.719042
Target:  5'- uCUCGUCCUCGUCGgcAAAGUCGCuCCg -3'
miRNA:   3'- -GAGUGGGAGCGGUgaUUUUAGCGcGG- -5'
12372 5' -52.5 NC_003324.1 + 40071 0.76 0.344319
Target:  5'- -aCACCCUCGCCACgcucgGcgcgacggacuuggAGAUUGCGCa -3'
miRNA:   3'- gaGUGGGAGCGGUGa----U--------------UUUAGCGCGg -5'
12372 5' -52.5 NC_003324.1 + 40410 0.69 0.719042
Target:  5'- uUCGCCUUCGUCuggcGCUuc-GUCGuCGCCu -3'
miRNA:   3'- gAGUGGGAGCGG----UGAuuuUAGC-GCGG- -5'
12372 5' -52.5 NC_003324.1 + 41154 0.67 0.837325
Target:  5'- -cUACCaUCGCCGCUAucacggugaCGCGCUg -3'
miRNA:   3'- gaGUGGgAGCGGUGAUuuua-----GCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 41954 0.68 0.771791
Target:  5'- -gCGCUCUCGCCAagcGGAAUCGgacugGCCg -3'
miRNA:   3'- gaGUGGGAGCGGUga-UUUUAGCg----CGG- -5'
12372 5' -52.5 NC_003324.1 + 42706 0.66 0.872899
Target:  5'- -gCGCCCggCGCCGCgcgaugacuaUAAGcagacgaaguAUCGCGUCa -3'
miRNA:   3'- gaGUGGGa-GCGGUG----------AUUU----------UAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 42980 0.73 0.478647
Target:  5'- gUCGCCC-CGCCGCUGGgucguucucGGUCGCagauccucgcggGCCg -3'
miRNA:   3'- gAGUGGGaGCGGUGAUU---------UUAGCG------------CGG- -5'
12372 5' -52.5 NC_003324.1 + 43675 0.66 0.880723
Target:  5'- aUCGgggaaCUCGCCAUgcgcugCGCGCCg -3'
miRNA:   3'- gAGUgg---GAGCGGUGauuuuaGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 44659 0.7 0.630638
Target:  5'- ---uUCCUCGCCGCcgu-GUCGCuGCCg -3'
miRNA:   3'- gaguGGGAGCGGUGauuuUAGCG-CGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.