miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12372 5' -52.5 NC_003324.1 + 23379 0.68 0.777902
Target:  5'- -cCACUUUCGCCACUccgcuuugaCGCGCUc -3'
miRNA:   3'- gaGUGGGAGCGGUGAuuuua----GCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 18637 0.68 0.781944
Target:  5'- -aCACCCgcagcgcgUCGCCAgUGAAAccggaCGUGCCc -3'
miRNA:   3'- gaGUGGG--------AGCGGUgAUUUUa----GCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 15087 0.69 0.70818
Target:  5'- gUCGCCUUUGCC-Cguc--UCGCGCUg -3'
miRNA:   3'- gAGUGGGAGCGGuGauuuuAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 51469 0.69 0.704905
Target:  5'- uUCACcggaaCCUCGCCACcGAAGUuaccaaauuucgugCGCGCUc -3'
miRNA:   3'- gAGUG-----GGAGCGGUGaUUUUA--------------GCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 15535 0.69 0.69724
Target:  5'- cCUUGgCCUCGCCcCUGGcaaccuUCGCGUCa -3'
miRNA:   3'- -GAGUgGGAGCGGuGAUUuu----AGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 15762 0.69 0.69724
Target:  5'- -gUACCCcUGUCGCUGGcccgccuuGAUCGCGUCa -3'
miRNA:   3'- gaGUGGGaGCGGUGAUU--------UUAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 7500 0.69 0.686235
Target:  5'- -gCACCCUUGCCAaucuc--CGUGCCc -3'
miRNA:   3'- gaGUGGGAGCGGUgauuuuaGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 45440 0.69 0.70818
Target:  5'- cCUCGCUgCUCGCCGcCUGcuucAAGUCGCcCCc -3'
miRNA:   3'- -GAGUGG-GAGCGGU-GAU----UUUAGCGcGG- -5'
12372 5' -52.5 NC_003324.1 + 40410 0.69 0.719042
Target:  5'- uUCGCCUUCGUCuggcGCUuc-GUCGuCGCCu -3'
miRNA:   3'- gAGUGGGAGCGG----UGAuuuUAGC-GCGG- -5'
12372 5' -52.5 NC_003324.1 + 38692 0.69 0.719042
Target:  5'- uCUCGUCCUCGUCGgcAAAGUCGCuCCg -3'
miRNA:   3'- -GAGUGGGAGCGGUgaUUUUAGCGcGG- -5'
12372 5' -52.5 NC_003324.1 + 35149 0.69 0.719042
Target:  5'- -gCGCCUUCGUCACcu---UCGgCGCCg -3'
miRNA:   3'- gaGUGGGAGCGGUGauuuuAGC-GCGG- -5'
12372 5' -52.5 NC_003324.1 + 29782 0.7 0.630638
Target:  5'- gCUCcaauCCCUCGgcguCCACacgcacAGUCGCGCCa -3'
miRNA:   3'- -GAGu---GGGAGC----GGUGauu---UUAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 23259 0.7 0.675177
Target:  5'- gUCGCCCaccUUGCCcggaagGCUcAGAUgCGCGCCg -3'
miRNA:   3'- gAGUGGG---AGCGG------UGAuUUUA-GCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 47357 0.7 0.664078
Target:  5'- aUCGCUaUCGCUACUGugcUgGCGCCg -3'
miRNA:   3'- gAGUGGgAGCGGUGAUuuuAgCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 27792 0.7 0.652948
Target:  5'- aCUCGCCCaacgUCGUCggACU--GAUgGCGCCg -3'
miRNA:   3'- -GAGUGGG----AGCGG--UGAuuUUAgCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 44659 0.7 0.630638
Target:  5'- ---uUCCUCGCCGCcgu-GUCGCuGCCg -3'
miRNA:   3'- gaguGGGAGCGGUGauuuUAGCG-CGG- -5'
12372 5' -52.5 NC_003324.1 + 17465 0.7 0.630638
Target:  5'- gCUCACCaa-GUC-CUGccGUCGCGCCg -3'
miRNA:   3'- -GAGUGGgagCGGuGAUuuUAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 3091 0.71 0.586114
Target:  5'- -cCGCUCUUGCCAUUcgaggcgaacaGAAAgCGCGCCu -3'
miRNA:   3'- gaGUGGGAGCGGUGA-----------UUUUaGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 31631 0.71 0.594987
Target:  5'- -gCACCCacUCGCgCACUuccuucggCGCGCCg -3'
miRNA:   3'- gaGUGGG--AGCG-GUGAuuuua---GCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 38688 0.71 0.608334
Target:  5'- gUCAUCCUCGCCAagcagaUGucAAUCGC-CCg -3'
miRNA:   3'- gAGUGGGAGCGGUg-----AUu-UUAGCGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.