miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12372 5' -52.5 NC_003324.1 + 29978 0.68 0.740491
Target:  5'- aUgGCCagcagcgCGCCG--AAGAUCGCGCCg -3'
miRNA:   3'- gAgUGGga-----GCGGUgaUUUUAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 45440 0.69 0.70818
Target:  5'- cCUCGCUgCUCGCCGcCUGcuucAAGUCGCcCCc -3'
miRNA:   3'- -GAGUGG-GAGCGGU-GAU----UUUAGCGcGG- -5'
12372 5' -52.5 NC_003324.1 + 15087 0.69 0.70818
Target:  5'- gUCGCCUUUGCC-Cguc--UCGCGCUg -3'
miRNA:   3'- gAGUGGGAGCGGuGauuuuAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 51469 0.69 0.704905
Target:  5'- uUCACcggaaCCUCGCCACcGAAGUuaccaaauuucgugCGCGCUc -3'
miRNA:   3'- gAGUG-----GGAGCGGUGaUUUUA--------------GCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 15535 0.69 0.69724
Target:  5'- cCUUGgCCUCGCCcCUGGcaaccuUCGCGUCa -3'
miRNA:   3'- -GAGUgGGAGCGGuGAUUuu----AGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 15762 0.69 0.69724
Target:  5'- -gUACCCcUGUCGCUGGcccgccuuGAUCGCGUCa -3'
miRNA:   3'- gaGUGGGaGCGGUGAUU--------UUAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 7500 0.69 0.686235
Target:  5'- -gCACCCUUGCCAaucuc--CGUGCCc -3'
miRNA:   3'- gaGUGGGAGCGGUgauuuuaGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 44659 0.7 0.630638
Target:  5'- ---uUCCUCGCCGCcgu-GUCGCuGCCg -3'
miRNA:   3'- gaguGGGAGCGGUGauuuUAGCG-CGG- -5'
12372 5' -52.5 NC_003324.1 + 38688 0.71 0.608334
Target:  5'- gUCAUCCUCGCCAagcagaUGucAAUCGC-CCg -3'
miRNA:   3'- gAGUGGGAGCGGUg-----AUu-UUAGCGcGG- -5'
12372 5' -52.5 NC_003324.1 + 36719 0.71 0.604994
Target:  5'- -gCACCUUCGCCGggGAAaucuaugacccgcuAUCGCGCg -3'
miRNA:   3'- gaGUGGGAGCGGUgaUUU--------------UAGCGCGg -5'
12372 5' -52.5 NC_003324.1 + 23620 0.71 0.59832
Target:  5'- -gCGCCCgcCGCCACgcuguggggcaccGAUCGUGCCg -3'
miRNA:   3'- gaGUGGGa-GCGGUGauu----------UUAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 50543 0.72 0.542215
Target:  5'- aUCACuCUUCGCC-CUccGGAUCGCGCa -3'
miRNA:   3'- gAGUG-GGAGCGGuGAu-UUUAGCGCGg -5'
12372 5' -52.5 NC_003324.1 + 42980 0.73 0.478647
Target:  5'- gUCGCCC-CGCCGCUGGgucguucucGGUCGCagauccucgcggGCCg -3'
miRNA:   3'- gAGUGGGaGCGGUGAUU---------UUAGCG------------CGG- -5'
12372 5' -52.5 NC_003324.1 + 7185 0.75 0.390859
Target:  5'- aUCGugaCCUCGUCGCUu---UCGCGCCa -3'
miRNA:   3'- gAGUg--GGAGCGGUGAuuuuAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 40071 0.76 0.344319
Target:  5'- -aCACCCUCGCCACgcucgGcgcgacggacuuggAGAUUGCGCa -3'
miRNA:   3'- gaGUGGGAGCGGUGa----U--------------UUUAGCGCGg -5'
12372 5' -52.5 NC_003324.1 + 26718 0.76 0.33026
Target:  5'- gUCACCCUCGCCGgCUAccauaucgaGAAggGUGCCc -3'
miRNA:   3'- gAGUGGGAGCGGU-GAU---------UUUagCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 33618 1 0.00873
Target:  5'- aCUCACCCUCGCCACUAAAAUCG-GCCc -3'
miRNA:   3'- -GAGUGGGAGCGGUGAUUUUAGCgCGG- -5'
12372 5' -52.5 NC_003324.1 + 41154 0.67 0.837325
Target:  5'- -cUACCaUCGCCGCUAucacggugaCGCGCUg -3'
miRNA:   3'- gaGUGGgAGCGGUGAUuuua-----GCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 49439 0.66 0.880723
Target:  5'- gUCGCCCgaucgUCGacaCCGCUGu--UgGCGCCg -3'
miRNA:   3'- gAGUGGG-----AGC---GGUGAUuuuAgCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 4129 0.66 0.880723
Target:  5'- gCUCuuCCUCGUgAUgucgaugAAGAgCGCGCCg -3'
miRNA:   3'- -GAGugGGAGCGgUGa------UUUUaGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.