Results 61 - 76 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12372 | 5' | -52.5 | NC_003324.1 | + | 42706 | 0.66 | 0.872899 |
Target: 5'- -gCGCCCggCGCCGCgcgaugacuaUAAGcagacgaaguAUCGCGUCa -3' miRNA: 3'- gaGUGGGa-GCGGUG----------AUUU----------UAGCGCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 52199 | 0.66 | 0.863172 |
Target: 5'- gCUCGCCUUCGCCGaccucgucaaaaUAAucGUCgGCGUCc -3' miRNA: 3'- -GAGUGGGAGCGGUg-----------AUUu-UAG-CGCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 54621 | 0.66 | 0.862345 |
Target: 5'- aCUCGCCCcaUUGCUugaacaggaacggaACgccGGUCGCGCUg -3' miRNA: 3'- -GAGUGGG--AGCGG--------------UGauuUUAGCGCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 25403 | 0.66 | 0.856489 |
Target: 5'- cCUCugCCgaaUCGuCCACcAGAAaCGCGCa -3' miRNA: 3'- -GAGugGG---AGC-GGUGaUUUUaGCGCGg -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 19263 | 0.66 | 0.847917 |
Target: 5'- aUCGCCCagCGCCGCgcagAGGAcCGCuaCa -3' miRNA: 3'- gAGUGGGa-GCGGUGa---UUUUaGCGcgG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 31344 | 0.66 | 0.847917 |
Target: 5'- --aGCCgUCGCCGCcgcAAAAaCGCGCa -3' miRNA: 3'- gagUGGgAGCGGUGa--UUUUaGCGCGg -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 12454 | 0.67 | 0.839113 |
Target: 5'- gCUUGCCCuUCGUCACUaccacGAGAaUGCuGCCg -3' miRNA: 3'- -GAGUGGG-AGCGGUGA-----UUUUaGCG-CGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 7874 | 0.68 | 0.765628 |
Target: 5'- --aGCCUuguUCGCCGCggcggcaaagcccguUGcGAUCGCGCCu -3' miRNA: 3'- gagUGGG---AGCGGUG---------------AUuUUAGCGCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 33855 | 0.67 | 0.830085 |
Target: 5'- gCUCACCaUUUGCCGCggugacugGGAGaCGUGCUg -3' miRNA: 3'- -GAGUGG-GAGCGGUGa-------UUUUaGCGCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 30640 | 0.67 | 0.829171 |
Target: 5'- -gCAUgaUCGCCGCUGGAGUagagcagCGCGUCg -3' miRNA: 3'- gaGUGggAGCGGUGAUUUUA-------GCGCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 18885 | 0.67 | 0.820844 |
Target: 5'- --gACCUUCGCCGCgccaUGGAccCGCGCa -3' miRNA: 3'- gagUGGGAGCGGUG----AUUUuaGCGCGg -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 14669 | 0.67 | 0.811398 |
Target: 5'- -cCGCCUgCGCCGCcggccgcUUGCGCCg -3' miRNA: 3'- gaGUGGGaGCGGUGauuuu--AGCGCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 25335 | 0.68 | 0.791937 |
Target: 5'- aUCGCCCgUCGCCuugGCUuuAAggGCgGCCa -3' miRNA: 3'- gAGUGGG-AGCGG---UGAuuUUagCG-CGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 50944 | 0.68 | 0.781944 |
Target: 5'- gUCACcaCCUCGCCAUgcu-GUCGCugggcgaaccGCCu -3' miRNA: 3'- gAGUG--GGAGCGGUGauuuUAGCG----------CGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 54307 | 0.68 | 0.781944 |
Target: 5'- -gCGCCUUCgcuuugagcaGCCGCUcuauGUCGCGCUc -3' miRNA: 3'- gaGUGGGAG----------CGGUGAuuu-UAGCGCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 3338 | 0.68 | 0.775871 |
Target: 5'- -cCGCCCUcCGCUuucuuggauugcaggGCUu-AGUCGCGCUg -3' miRNA: 3'- gaGUGGGA-GCGG---------------UGAuuUUAGCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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