miRNA display CGI


Results 61 - 76 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12372 5' -52.5 NC_003324.1 + 45440 0.69 0.70818
Target:  5'- cCUCGCUgCUCGCCGcCUGcuucAAGUCGCcCCc -3'
miRNA:   3'- -GAGUGG-GAGCGGU-GAU----UUUAGCGcGG- -5'
12372 5' -52.5 NC_003324.1 + 47357 0.7 0.664078
Target:  5'- aUCGCUaUCGCUACUGugcUgGCGCCg -3'
miRNA:   3'- gAGUGGgAGCGGUGAUuuuAgCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 48059 0.66 0.847917
Target:  5'- aUCugCuCUCGgcgaugaucgaUCGCUucaugAGGAUCGCGCCg -3'
miRNA:   3'- gAGugG-GAGC-----------GGUGA-----UUUUAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 48433 0.68 0.76149
Target:  5'- cCUCAUCgaagagCGCCGCgccgAGAAgauggugCGCGCCa -3'
miRNA:   3'- -GAGUGGga----GCGGUGa---UUUUa------GCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 49439 0.66 0.880723
Target:  5'- gUCGCCCgaucgUCGacaCCGCUGu--UgGCGCCg -3'
miRNA:   3'- gAGUGGG-----AGC---GGUGAUuuuAgCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 49918 0.67 0.820844
Target:  5'- gCUCGCCUUCGCUGCccccAUCGCa-- -3'
miRNA:   3'- -GAGUGGGAGCGGUGauuuUAGCGcgg -5'
12372 5' -52.5 NC_003324.1 + 50543 0.72 0.542215
Target:  5'- aUCACuCUUCGCC-CUccGGAUCGCGCa -3'
miRNA:   3'- gAGUG-GGAGCGGuGAu-UUUAGCGCGg -5'
12372 5' -52.5 NC_003324.1 + 50944 0.68 0.781944
Target:  5'- gUCACcaCCUCGCCAUgcu-GUCGCugggcgaaccGCCu -3'
miRNA:   3'- gAGUG--GGAGCGGUGauuuUAGCG----------CGG- -5'
12372 5' -52.5 NC_003324.1 + 51469 0.69 0.704905
Target:  5'- uUCACcggaaCCUCGCCACcGAAGUuaccaaauuucgugCGCGCUc -3'
miRNA:   3'- gAGUG-----GGAGCGGUGaUUUUA--------------GCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 52199 0.66 0.863172
Target:  5'- gCUCGCCUUCGCCGaccucgucaaaaUAAucGUCgGCGUCc -3'
miRNA:   3'- -GAGUGGGAGCGGUg-----------AUUu-UAG-CGCGG- -5'
12372 5' -52.5 NC_003324.1 + 53899 0.68 0.740491
Target:  5'- -gCGCCC-CGCCGC-AAGAUCaucaGCGCg -3'
miRNA:   3'- gaGUGGGaGCGGUGaUUUUAG----CGCGg -5'
12372 5' -52.5 NC_003324.1 + 54307 0.68 0.781944
Target:  5'- -gCGCCUUCgcuuugagcaGCCGCUcuauGUCGCGCUc -3'
miRNA:   3'- gaGUGGGAG----------CGGUGAuuu-UAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 54621 0.66 0.862345
Target:  5'- aCUCGCCCcaUUGCUugaacaggaacggaACgccGGUCGCGCUg -3'
miRNA:   3'- -GAGUGGG--AGCGG--------------UGauuUUAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 55189 0.74 0.428596
Target:  5'- uCUCGCCCaCGCCAUgucGAUgGUGCCc -3'
miRNA:   3'- -GAGUGGGaGCGGUGauuUUAgCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 56957 0.66 0.875274
Target:  5'- -gCGCCCUCGCCGCcgcuccccaGCCc -3'
miRNA:   3'- gaGUGGGAGCGGUGauuuuagcgCGG- -5'
12372 5' -52.5 NC_003324.1 + 57102 0.72 0.553101
Target:  5'- cCUCGCCCUCGCaGCgcaagGGGAUCa-GCCa -3'
miRNA:   3'- -GAGUGGGAGCGgUGa----UUUUAGcgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.