miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12372 5' -52.5 NC_003324.1 + 2623 0.76 0.355357
Target:  5'- cCUCACCCUUGCCGCUGuuGAUCcaGUcCCa -3'
miRNA:   3'- -GAGUGGGAGCGGUGAUu-UUAG--CGcGG- -5'
12372 5' -52.5 NC_003324.1 + 3091 0.71 0.586114
Target:  5'- -cCGCUCUUGCCAUUcgaggcgaacaGAAAgCGCGCCu -3'
miRNA:   3'- gaGUGGGAGCGGUGA-----------UUUUaGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 3338 0.68 0.775871
Target:  5'- -cCGCCCUcCGCUuucuuggauugcaggGCUu-AGUCGCGCUg -3'
miRNA:   3'- gaGUGGGA-GCGG---------------UGAuuUUAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 4129 0.66 0.880723
Target:  5'- gCUCuuCCUCGUgAUgucgaugAAGAgCGCGCCg -3'
miRNA:   3'- -GAGugGGAGCGgUGa------UUUUaGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 5565 0.66 0.872899
Target:  5'- --aACCUUCGCCGCgggcgucAUCG-GCCu -3'
miRNA:   3'- gagUGGGAGCGGUGauuu---UAGCgCGG- -5'
12372 5' -52.5 NC_003324.1 + 6147 0.72 0.542215
Target:  5'- aCUgACCCgCGCCGcCUGGAAUgCGCuGCCc -3'
miRNA:   3'- -GAgUGGGaGCGGU-GAUUUUA-GCG-CGG- -5'
12372 5' -52.5 NC_003324.1 + 7185 0.75 0.390859
Target:  5'- aUCGugaCCUCGUCGCUu---UCGCGCCa -3'
miRNA:   3'- gAGUg--GGAGCGGUGAuuuuAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 7500 0.69 0.686235
Target:  5'- -gCACCCUUGCCAaucuc--CGUGCCc -3'
miRNA:   3'- gaGUGGGAGCGGUgauuuuaGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 7638 0.66 0.856489
Target:  5'- -gUAUCUUCGC----GGAGUCGCGCCg -3'
miRNA:   3'- gaGUGGGAGCGgugaUUUUAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 7874 0.68 0.765628
Target:  5'- --aGCCUuguUCGCCGCggcggcaaagcccguUGcGAUCGCGCCu -3'
miRNA:   3'- gagUGGG---AGCGGUG---------------AUuUUAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 12454 0.67 0.839113
Target:  5'- gCUUGCCCuUCGUCACUaccacGAGAaUGCuGCCg -3'
miRNA:   3'- -GAGUGGG-AGCGGUGA-----UUUUaGCG-CGG- -5'
12372 5' -52.5 NC_003324.1 + 12716 0.68 0.771791
Target:  5'- gUCAgCCguucuuagugCGCUcguCUGAAAUCGCGUCa -3'
miRNA:   3'- gAGUgGGa---------GCGGu--GAUUUUAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 14669 0.67 0.811398
Target:  5'- -cCGCCUgCGCCGCcggccgcUUGCGCCg -3'
miRNA:   3'- gaGUGGGaGCGGUGauuuu--AGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 15087 0.69 0.70818
Target:  5'- gUCGCCUUUGCC-Cguc--UCGCGCUg -3'
miRNA:   3'- gAGUGGGAGCGGuGauuuuAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 15535 0.69 0.69724
Target:  5'- cCUUGgCCUCGCCcCUGGcaaccuUCGCGUCa -3'
miRNA:   3'- -GAGUgGGAGCGGuGAUUuu----AGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 15762 0.69 0.69724
Target:  5'- -gUACCCcUGUCGCUGGcccgccuuGAUCGCGUCa -3'
miRNA:   3'- gaGUGGGaGCGGUGAUU--------UUAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 17344 0.67 0.798831
Target:  5'- -aCGCCCUCGUCGuuauaacgauaggcCUugagGAGGUCGCGUa -3'
miRNA:   3'- gaGUGGGAGCGGU--------------GA----UUUUAGCGCGg -5'
12372 5' -52.5 NC_003324.1 + 17424 0.66 0.864818
Target:  5'- gUCGCCCUCGUCGgUcauGAcgCGgaGCCc -3'
miRNA:   3'- gAGUGGGAGCGGUgAu--UUuaGCg-CGG- -5'
12372 5' -52.5 NC_003324.1 + 17465 0.7 0.630638
Target:  5'- gCUCACCaa-GUC-CUGccGUCGCGCCg -3'
miRNA:   3'- -GAGUGGgagCGGuGAUuuUAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 18637 0.68 0.781944
Target:  5'- -aCACCCgcagcgcgUCGCCAgUGAAAccggaCGUGCCc -3'
miRNA:   3'- gaGUGGG--------AGCGGUgAUUUUa----GCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.