miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12372 5' -52.5 NC_003324.1 + 33618 1 0.00873
Target:  5'- aCUCACCCUCGCCACUAAAAUCG-GCCc -3'
miRNA:   3'- -GAGUGGGAGCGGUGAUUUUAGCgCGG- -5'
12372 5' -52.5 NC_003324.1 + 26718 0.76 0.33026
Target:  5'- gUCACCCUCGCCGgCUAccauaucgaGAAggGUGCCc -3'
miRNA:   3'- gAGUGGGAGCGGU-GAU---------UUUagCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 40071 0.76 0.344319
Target:  5'- -aCACCCUCGCCACgcucgGcgcgacggacuuggAGAUUGCGCa -3'
miRNA:   3'- gaGUGGGAGCGGUGa----U--------------UUUAGCGCGg -5'
12372 5' -52.5 NC_003324.1 + 2623 0.76 0.355357
Target:  5'- cCUCACCCUUGCCGCUGuuGAUCcaGUcCCa -3'
miRNA:   3'- -GAGUGGGAGCGGUGAUu-UUAG--CGcGG- -5'
12372 5' -52.5 NC_003324.1 + 7185 0.75 0.390859
Target:  5'- aUCGugaCCUCGUCGCUu---UCGCGCCa -3'
miRNA:   3'- gAGUg--GGAGCGGUGAuuuuAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 32835 0.75 0.400089
Target:  5'- -cCGCCUcgaucaUCGCCACUGA---CGCGCCu -3'
miRNA:   3'- gaGUGGG------AGCGGUGAUUuuaGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 36842 0.75 0.400089
Target:  5'- aUCGCCCUCGUCgauGCUGcgcucAAUCaGCGCCu -3'
miRNA:   3'- gAGUGGGAGCGG---UGAUu----UUAG-CGCGG- -5'
12372 5' -52.5 NC_003324.1 + 55189 0.74 0.428596
Target:  5'- uCUCGCCCaCGCCAUgucGAUgGUGCCc -3'
miRNA:   3'- -GAGUGGGaGCGGUGauuUUAgCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 28617 0.74 0.448254
Target:  5'- gUCGCCCUCGUgGCccGGAUCGUugcggGCCg -3'
miRNA:   3'- gAGUGGGAGCGgUGauUUUAGCG-----CGG- -5'
12372 5' -52.5 NC_003324.1 + 42980 0.73 0.478647
Target:  5'- gUCGCCC-CGCCGCUGGgucguucucGGUCGCagauccucgcggGCCg -3'
miRNA:   3'- gAGUGGGaGCGGUGAUU---------UUAGCG------------CGG- -5'
12372 5' -52.5 NC_003324.1 + 6147 0.72 0.542215
Target:  5'- aCUgACCCgCGCCGcCUGGAAUgCGCuGCCc -3'
miRNA:   3'- -GAgUGGGaGCGGU-GAUUUUA-GCG-CGG- -5'
12372 5' -52.5 NC_003324.1 + 50543 0.72 0.542215
Target:  5'- aUCACuCUUCGCC-CUccGGAUCGCGCa -3'
miRNA:   3'- gAGUG-GGAGCGGuGAu-UUUAGCGCGg -5'
12372 5' -52.5 NC_003324.1 + 57102 0.72 0.553101
Target:  5'- cCUCGCCCUCGCaGCgcaagGGGAUCa-GCCa -3'
miRNA:   3'- -GAGUGGGAGCGgUGa----UUUUAGcgCGG- -5'
12372 5' -52.5 NC_003324.1 + 30649 0.72 0.564052
Target:  5'- uUC-CCCgaCGCCACgGAgauagcugcgcgGAUCGCGCCa -3'
miRNA:   3'- gAGuGGGa-GCGGUGaUU------------UUAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 3091 0.71 0.586114
Target:  5'- -cCGCUCUUGCCAUUcgaggcgaacaGAAAgCGCGCCu -3'
miRNA:   3'- gaGUGGGAGCGGUGA-----------UUUUaGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 31631 0.71 0.594987
Target:  5'- -gCACCCacUCGCgCACUuccuucggCGCGCCg -3'
miRNA:   3'- gaGUGGG--AGCG-GUGAuuuua---GCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 23620 0.71 0.59832
Target:  5'- -gCGCCCgcCGCCACgcuguggggcaccGAUCGUGCCg -3'
miRNA:   3'- gaGUGGGa-GCGGUGauu----------UUAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 36719 0.71 0.604994
Target:  5'- -gCACCUUCGCCGggGAAaucuaugacccgcuAUCGCGCg -3'
miRNA:   3'- gaGUGGGAGCGGUgaUUU--------------UAGCGCGg -5'
12372 5' -52.5 NC_003324.1 + 38688 0.71 0.608334
Target:  5'- gUCAUCCUCGCCAagcagaUGucAAUCGC-CCg -3'
miRNA:   3'- gAGUGGGAGCGGUg-----AUu-UUAGCGcGG- -5'
12372 5' -52.5 NC_003324.1 + 29782 0.7 0.630638
Target:  5'- gCUCcaauCCCUCGgcguCCACacgcacAGUCGCGCCa -3'
miRNA:   3'- -GAGu---GGGAGC----GGUGauu---UUAGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.