miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12372 5' -52.5 NC_003324.1 + 4129 0.66 0.880723
Target:  5'- gCUCuuCCUCGUgAUgucgaugAAGAgCGCGCCg -3'
miRNA:   3'- -GAGugGGAGCGgUGa------UUUUaGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 49439 0.66 0.880723
Target:  5'- gUCGCCCgaucgUCGacaCCGCUGu--UgGCGCCg -3'
miRNA:   3'- gAGUGGG-----AGC---GGUGAUuuuAgCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 43675 0.66 0.880723
Target:  5'- aUCGgggaaCUCGCCAUgcgcugCGCGCCg -3'
miRNA:   3'- gAGUgg---GAGCGGUGauuuuaGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 37018 0.66 0.880723
Target:  5'- uUCGCCCUCGUCA------UCGC-CCu -3'
miRNA:   3'- gAGUGGGAGCGGUgauuuuAGCGcGG- -5'
12372 5' -52.5 NC_003324.1 + 56957 0.66 0.875274
Target:  5'- -gCGCCCUCGCCGCcgcuccccaGCCc -3'
miRNA:   3'- gaGUGGGAGCGGUGauuuuagcgCGG- -5'
12372 5' -52.5 NC_003324.1 + 42706 0.66 0.872899
Target:  5'- -gCGCCCggCGCCGCgcgaugacuaUAAGcagacgaaguAUCGCGUCa -3'
miRNA:   3'- gaGUGGGa-GCGGUG----------AUUU----------UAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 5565 0.66 0.872899
Target:  5'- --aACCUUCGCCGCgggcgucAUCG-GCCu -3'
miRNA:   3'- gagUGGGAGCGGUGauuu---UAGCgCGG- -5'
12372 5' -52.5 NC_003324.1 + 23660 0.66 0.864818
Target:  5'- cCUCGauaugCUUCGCCGgUAuccacggCGCGCCg -3'
miRNA:   3'- -GAGUg----GGAGCGGUgAUuuua---GCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 17424 0.66 0.864818
Target:  5'- gUCGCCCUCGUCGgUcauGAcgCGgaGCCc -3'
miRNA:   3'- gAGUGGGAGCGGUgAu--UUuaGCg-CGG- -5'
12372 5' -52.5 NC_003324.1 + 52199 0.66 0.863172
Target:  5'- gCUCGCCUUCGCCGaccucgucaaaaUAAucGUCgGCGUCc -3'
miRNA:   3'- -GAGUGGGAGCGGUg-----------AUUu-UAG-CGCGG- -5'
12372 5' -52.5 NC_003324.1 + 54621 0.66 0.862345
Target:  5'- aCUCGCCCcaUUGCUugaacaggaacggaACgccGGUCGCGCUg -3'
miRNA:   3'- -GAGUGGG--AGCGG--------------UGauuUUAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 7638 0.66 0.856489
Target:  5'- -gUAUCUUCGC----GGAGUCGCGCCg -3'
miRNA:   3'- gaGUGGGAGCGgugaUUUUAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 25403 0.66 0.856489
Target:  5'- cCUCugCCgaaUCGuCCACcAGAAaCGCGCa -3'
miRNA:   3'- -GAGugGG---AGC-GGUGaUUUUaGCGCGg -5'
12372 5' -52.5 NC_003324.1 + 48059 0.66 0.847917
Target:  5'- aUCugCuCUCGgcgaugaucgaUCGCUucaugAGGAUCGCGCCg -3'
miRNA:   3'- gAGugG-GAGC-----------GGUGA-----UUUUAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 31344 0.66 0.847917
Target:  5'- --aGCCgUCGCCGCcgcAAAAaCGCGCa -3'
miRNA:   3'- gagUGGgAGCGGUGa--UUUUaGCGCGg -5'
12372 5' -52.5 NC_003324.1 + 19263 0.66 0.847917
Target:  5'- aUCGCCCagCGCCGCgcagAGGAcCGCuaCa -3'
miRNA:   3'- gAGUGGGa-GCGGUGa---UUUUaGCGcgG- -5'
12372 5' -52.5 NC_003324.1 + 12454 0.67 0.839113
Target:  5'- gCUUGCCCuUCGUCACUaccacGAGAaUGCuGCCg -3'
miRNA:   3'- -GAGUGGG-AGCGGUGA-----UUUUaGCG-CGG- -5'
12372 5' -52.5 NC_003324.1 + 41154 0.67 0.837325
Target:  5'- -cUACCaUCGCCGCUAucacggugaCGCGCUg -3'
miRNA:   3'- gaGUGGgAGCGGUGAUuuua-----GCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 33855 0.67 0.830085
Target:  5'- gCUCACCaUUUGCCGCggugacugGGAGaCGUGCUg -3'
miRNA:   3'- -GAGUGG-GAGCGGUGa-------UUUUaGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 30640 0.67 0.829171
Target:  5'- -gCAUgaUCGCCGCUGGAGUagagcagCGCGUCg -3'
miRNA:   3'- gaGUGggAGCGGUGAUUUUA-------GCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.