Results 21 - 40 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12372 | 5' | -52.5 | NC_003324.1 | + | 18885 | 0.67 | 0.820844 |
Target: 5'- --gACCUUCGCCGCgccaUGGAccCGCGCa -3' miRNA: 3'- gagUGGGAGCGGUG----AUUUuaGCGCGg -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 49918 | 0.67 | 0.820844 |
Target: 5'- gCUCGCCUUCGCUGCccccAUCGCa-- -3' miRNA: 3'- -GAGUGGGAGCGGUGauuuUAGCGcgg -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 14669 | 0.67 | 0.811398 |
Target: 5'- -cCGCCUgCGCCGCcggccgcUUGCGCCg -3' miRNA: 3'- gaGUGGGaGCGGUGauuuu--AGCGCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 20992 | 0.67 | 0.801759 |
Target: 5'- gCUCACgUcggaUCGCCGCaauGAUggcCGCGCCg -3' miRNA: 3'- -GAGUGgG----AGCGGUGauuUUA---GCGCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 32084 | 0.67 | 0.799809 |
Target: 5'- uUCGgCCUCGCUGCgccucggcUCGuCGCCg -3' miRNA: 3'- gAGUgGGAGCGGUGauuuu---AGC-GCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 17344 | 0.67 | 0.798831 |
Target: 5'- -aCGCCCUCGUCGuuauaacgauaggcCUugagGAGGUCGCGUa -3' miRNA: 3'- gaGUGGGAGCGGU--------------GA----UUUUAGCGCGg -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 25335 | 0.68 | 0.791937 |
Target: 5'- aUCGCCCgUCGCCuugGCUuuAAggGCgGCCa -3' miRNA: 3'- gAGUGGG-AGCGG---UGAuuUUagCG-CGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 54307 | 0.68 | 0.781944 |
Target: 5'- -gCGCCUUCgcuuugagcaGCCGCUcuauGUCGCGCUc -3' miRNA: 3'- gaGUGGGAG----------CGGUGAuuu-UAGCGCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 18637 | 0.68 | 0.781944 |
Target: 5'- -aCACCCgcagcgcgUCGCCAgUGAAAccggaCGUGCCc -3' miRNA: 3'- gaGUGGG--------AGCGGUgAUUUUa----GCGCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 50944 | 0.68 | 0.781944 |
Target: 5'- gUCACcaCCUCGCCAUgcu-GUCGCugggcgaaccGCCu -3' miRNA: 3'- gAGUG--GGAGCGGUGauuuUAGCG----------CGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 23379 | 0.68 | 0.777902 |
Target: 5'- -cCACUUUCGCCACUccgcuuugaCGCGCUc -3' miRNA: 3'- gaGUGGGAGCGGUGAuuuua----GCGCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 3338 | 0.68 | 0.775871 |
Target: 5'- -cCGCCCUcCGCUuucuuggauugcaggGCUu-AGUCGCGCUg -3' miRNA: 3'- gaGUGGGA-GCGG---------------UGAuuUUAGCGCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 12716 | 0.68 | 0.771791 |
Target: 5'- gUCAgCCguucuuagugCGCUcguCUGAAAUCGCGUCa -3' miRNA: 3'- gAGUgGGa---------GCGGu--GAUUUUAGCGCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 41954 | 0.68 | 0.771791 |
Target: 5'- -gCGCUCUCGCCAagcGGAAUCGgacugGCCg -3' miRNA: 3'- gaGUGGGAGCGGUga-UUUUAGCg----CGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 7874 | 0.68 | 0.765628 |
Target: 5'- --aGCCUuguUCGCCGCggcggcaaagcccguUGcGAUCGCGCCu -3' miRNA: 3'- gagUGGG---AGCGGUG---------------AUuUUAGCGCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 27358 | 0.68 | 0.76149 |
Target: 5'- gUgGCCgUCGCUGCgguacuUCGUGCCg -3' miRNA: 3'- gAgUGGgAGCGGUGauuuu-AGCGCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 48433 | 0.68 | 0.76149 |
Target: 5'- cCUCAUCgaagagCGCCGCgccgAGAAgauggugCGCGCCa -3' miRNA: 3'- -GAGUGGga----GCGGUGa---UUUUa------GCGCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 24372 | 0.68 | 0.755243 |
Target: 5'- -aCGCCUUCGCCAagcuccgcCGUGCCc -3' miRNA: 3'- gaGUGGGAGCGGUgauuuua-GCGCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 21142 | 0.68 | 0.751053 |
Target: 5'- uCUCGgCCUCGUCAgUGAgcGAgcgggCGCGCg -3' miRNA: 3'- -GAGUgGGAGCGGUgAUU--UUa----GCGCGg -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 29978 | 0.68 | 0.740491 |
Target: 5'- aUgGCCagcagcgCGCCG--AAGAUCGCGCCg -3' miRNA: 3'- gAgUGGga-----GCGGUgaUUUUAGCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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