miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12372 5' -52.5 NC_003324.1 + 18885 0.67 0.820844
Target:  5'- --gACCUUCGCCGCgccaUGGAccCGCGCa -3'
miRNA:   3'- gagUGGGAGCGGUG----AUUUuaGCGCGg -5'
12372 5' -52.5 NC_003324.1 + 49918 0.67 0.820844
Target:  5'- gCUCGCCUUCGCUGCccccAUCGCa-- -3'
miRNA:   3'- -GAGUGGGAGCGGUGauuuUAGCGcgg -5'
12372 5' -52.5 NC_003324.1 + 14669 0.67 0.811398
Target:  5'- -cCGCCUgCGCCGCcggccgcUUGCGCCg -3'
miRNA:   3'- gaGUGGGaGCGGUGauuuu--AGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 20992 0.67 0.801759
Target:  5'- gCUCACgUcggaUCGCCGCaauGAUggcCGCGCCg -3'
miRNA:   3'- -GAGUGgG----AGCGGUGauuUUA---GCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 32084 0.67 0.799809
Target:  5'- uUCGgCCUCGCUGCgccucggcUCGuCGCCg -3'
miRNA:   3'- gAGUgGGAGCGGUGauuuu---AGC-GCGG- -5'
12372 5' -52.5 NC_003324.1 + 17344 0.67 0.798831
Target:  5'- -aCGCCCUCGUCGuuauaacgauaggcCUugagGAGGUCGCGUa -3'
miRNA:   3'- gaGUGGGAGCGGU--------------GA----UUUUAGCGCGg -5'
12372 5' -52.5 NC_003324.1 + 25335 0.68 0.791937
Target:  5'- aUCGCCCgUCGCCuugGCUuuAAggGCgGCCa -3'
miRNA:   3'- gAGUGGG-AGCGG---UGAuuUUagCG-CGG- -5'
12372 5' -52.5 NC_003324.1 + 54307 0.68 0.781944
Target:  5'- -gCGCCUUCgcuuugagcaGCCGCUcuauGUCGCGCUc -3'
miRNA:   3'- gaGUGGGAG----------CGGUGAuuu-UAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 50944 0.68 0.781944
Target:  5'- gUCACcaCCUCGCCAUgcu-GUCGCugggcgaaccGCCu -3'
miRNA:   3'- gAGUG--GGAGCGGUGauuuUAGCG----------CGG- -5'
12372 5' -52.5 NC_003324.1 + 18637 0.68 0.781944
Target:  5'- -aCACCCgcagcgcgUCGCCAgUGAAAccggaCGUGCCc -3'
miRNA:   3'- gaGUGGG--------AGCGGUgAUUUUa----GCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 23379 0.68 0.777902
Target:  5'- -cCACUUUCGCCACUccgcuuugaCGCGCUc -3'
miRNA:   3'- gaGUGGGAGCGGUGAuuuua----GCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 3338 0.68 0.775871
Target:  5'- -cCGCCCUcCGCUuucuuggauugcaggGCUu-AGUCGCGCUg -3'
miRNA:   3'- gaGUGGGA-GCGG---------------UGAuuUUAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 41954 0.68 0.771791
Target:  5'- -gCGCUCUCGCCAagcGGAAUCGgacugGCCg -3'
miRNA:   3'- gaGUGGGAGCGGUga-UUUUAGCg----CGG- -5'
12372 5' -52.5 NC_003324.1 + 12716 0.68 0.771791
Target:  5'- gUCAgCCguucuuagugCGCUcguCUGAAAUCGCGUCa -3'
miRNA:   3'- gAGUgGGa---------GCGGu--GAUUUUAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 7874 0.68 0.765628
Target:  5'- --aGCCUuguUCGCCGCggcggcaaagcccguUGcGAUCGCGCCu -3'
miRNA:   3'- gagUGGG---AGCGGUG---------------AUuUUAGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 48433 0.68 0.76149
Target:  5'- cCUCAUCgaagagCGCCGCgccgAGAAgauggugCGCGCCa -3'
miRNA:   3'- -GAGUGGga----GCGGUGa---UUUUa------GCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 27358 0.68 0.76149
Target:  5'- gUgGCCgUCGCUGCgguacuUCGUGCCg -3'
miRNA:   3'- gAgUGGgAGCGGUGauuuu-AGCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 24372 0.68 0.755243
Target:  5'- -aCGCCUUCGCCAagcuccgcCGUGCCc -3'
miRNA:   3'- gaGUGGGAGCGGUgauuuua-GCGCGG- -5'
12372 5' -52.5 NC_003324.1 + 21142 0.68 0.751053
Target:  5'- uCUCGgCCUCGUCAgUGAgcGAgcgggCGCGCg -3'
miRNA:   3'- -GAGUgGGAGCGGUgAUU--UUa----GCGCGg -5'
12372 5' -52.5 NC_003324.1 + 53899 0.68 0.740491
Target:  5'- -gCGCCC-CGCCGC-AAGAUCaucaGCGCg -3'
miRNA:   3'- gaGUGGGaGCGGUGaUUUUAG----CGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.