Results 41 - 60 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12372 | 5' | -52.5 | NC_003324.1 | + | 35417 | 0.68 | 0.740491 |
Target: 5'- cCUCGCCCUCGgUGCggGAGAcgaacccggcuUCGUGCa -3' miRNA: 3'- -GAGUGGGAGCgGUGa-UUUU-----------AGCGCGg -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 53899 | 0.68 | 0.740491 |
Target: 5'- -gCGCCC-CGCCGC-AAGAUCaucaGCGCg -3' miRNA: 3'- gaGUGGGaGCGGUGaUUUUAG----CGCGg -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 40410 | 0.69 | 0.719042 |
Target: 5'- uUCGCCUUCGUCuggcGCUuc-GUCGuCGCCu -3' miRNA: 3'- gAGUGGGAGCGG----UGAuuuUAGC-GCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 38692 | 0.69 | 0.719042 |
Target: 5'- uCUCGUCCUCGUCGgcAAAGUCGCuCCg -3' miRNA: 3'- -GAGUGGGAGCGGUgaUUUUAGCGcGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 35149 | 0.69 | 0.719042 |
Target: 5'- -gCGCCUUCGUCACcu---UCGgCGCCg -3' miRNA: 3'- gaGUGGGAGCGGUGauuuuAGC-GCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 45440 | 0.69 | 0.70818 |
Target: 5'- cCUCGCUgCUCGCCGcCUGcuucAAGUCGCcCCc -3' miRNA: 3'- -GAGUGG-GAGCGGU-GAU----UUUAGCGcGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 15087 | 0.69 | 0.70818 |
Target: 5'- gUCGCCUUUGCC-Cguc--UCGCGCUg -3' miRNA: 3'- gAGUGGGAGCGGuGauuuuAGCGCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 51469 | 0.69 | 0.704905 |
Target: 5'- uUCACcggaaCCUCGCCACcGAAGUuaccaaauuucgugCGCGCUc -3' miRNA: 3'- gAGUG-----GGAGCGGUGaUUUUA--------------GCGCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 15535 | 0.69 | 0.69724 |
Target: 5'- cCUUGgCCUCGCCcCUGGcaaccuUCGCGUCa -3' miRNA: 3'- -GAGUgGGAGCGGuGAUUuu----AGCGCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 15762 | 0.69 | 0.69724 |
Target: 5'- -gUACCCcUGUCGCUGGcccgccuuGAUCGCGUCa -3' miRNA: 3'- gaGUGGGaGCGGUGAUU--------UUAGCGCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 7500 | 0.69 | 0.686235 |
Target: 5'- -gCACCCUUGCCAaucuc--CGUGCCc -3' miRNA: 3'- gaGUGGGAGCGGUgauuuuaGCGCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 23259 | 0.7 | 0.675177 |
Target: 5'- gUCGCCCaccUUGCCcggaagGCUcAGAUgCGCGCCg -3' miRNA: 3'- gAGUGGG---AGCGG------UGAuUUUA-GCGCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 47357 | 0.7 | 0.664078 |
Target: 5'- aUCGCUaUCGCUACUGugcUgGCGCCg -3' miRNA: 3'- gAGUGGgAGCGGUGAUuuuAgCGCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 27792 | 0.7 | 0.652948 |
Target: 5'- aCUCGCCCaacgUCGUCggACU--GAUgGCGCCg -3' miRNA: 3'- -GAGUGGG----AGCGG--UGAuuUUAgCGCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 29782 | 0.7 | 0.630638 |
Target: 5'- gCUCcaauCCCUCGgcguCCACacgcacAGUCGCGCCa -3' miRNA: 3'- -GAGu---GGGAGC----GGUGauu---UUAGCGCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 17465 | 0.7 | 0.630638 |
Target: 5'- gCUCACCaa-GUC-CUGccGUCGCGCCg -3' miRNA: 3'- -GAGUGGgagCGGuGAUuuUAGCGCGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 44659 | 0.7 | 0.630638 |
Target: 5'- ---uUCCUCGCCGCcgu-GUCGCuGCCg -3' miRNA: 3'- gaguGGGAGCGGUGauuuUAGCG-CGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 38688 | 0.71 | 0.608334 |
Target: 5'- gUCAUCCUCGCCAagcagaUGucAAUCGC-CCg -3' miRNA: 3'- gAGUGGGAGCGGUg-----AUu-UUAGCGcGG- -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 36719 | 0.71 | 0.604994 |
Target: 5'- -gCACCUUCGCCGggGAAaucuaugacccgcuAUCGCGCg -3' miRNA: 3'- gaGUGGGAGCGGUgaUUU--------------UAGCGCGg -5' |
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12372 | 5' | -52.5 | NC_003324.1 | + | 23620 | 0.71 | 0.59832 |
Target: 5'- -gCGCCCgcCGCCACgcuguggggcaccGAUCGUGCCg -3' miRNA: 3'- gaGUGGGa-GCGGUGauu----------UUAGCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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