miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12374 3' -53.6 NC_003324.1 + 160 0.68 0.717664
Target:  5'- uGGUCAGCucGACGgccgGCGCAuaaGAGCGUg -3'
miRNA:   3'- gCCGGUUGuuCUGC----UGCGUc--UUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 1514 0.79 0.187656
Target:  5'- gGGCCAGCGAGGaucCGGCgGCAGuGGUGCg -3'
miRNA:   3'- gCCGGUUGUUCU---GCUG-CGUCuUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 1571 0.67 0.758808
Target:  5'- cCGGCCGgaaGCAaugccauAGACGAagaugGCGGAAauccGCGCc -3'
miRNA:   3'- -GCCGGU---UGU-------UCUGCUg----CGUCUU----CGCG- -5'
12374 3' -53.6 NC_003324.1 + 3098 0.68 0.728366
Target:  5'- -uGCCAuuCGAGGCGAa-CAGAaAGCGCg -3'
miRNA:   3'- gcCGGUu-GUUCUGCUgcGUCU-UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 3519 0.71 0.553005
Target:  5'- -cGCCA--AAGACGgugcuuucccACGCGGAAGUGCa -3'
miRNA:   3'- gcCGGUugUUCUGC----------UGCGUCUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 3759 0.66 0.837127
Target:  5'- gCGGuCCAAUGgcAGAUGAUGC-GAAGCa- -3'
miRNA:   3'- -GCC-GGUUGU--UCUGCUGCGuCUUCGcg -5'
12374 3' -53.6 NC_003324.1 + 4206 0.67 0.770083
Target:  5'- cCGGCUuccgauuCGAGAU--CGguGAGGCGCu -3'
miRNA:   3'- -GCCGGuu-----GUUCUGcuGCguCUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 4524 0.66 0.803763
Target:  5'- aGGCCucgaucgacgccaccGACAAGAUGAgcCGCGccguGAucgAGCGCg -3'
miRNA:   3'- gCCGG---------------UUGUUCUGCU--GCGU----CU---UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 4618 0.67 0.763954
Target:  5'- -cGCCAACAuGAUGcCGCugaugaucaacggcGAAGCGCa -3'
miRNA:   3'- gcCGGUUGUuCUGCuGCGu-------------CUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 4751 0.69 0.663101
Target:  5'- aGGUCAuguuccuggaACGGGuucAUGACGCAGAcguAGUGCg -3'
miRNA:   3'- gCCGGU----------UGUUC---UGCUGCGUCU---UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 6216 0.73 0.42943
Target:  5'- -aGCCAugAAGGCcgaGGCGCAGcagcAGCGCa -3'
miRNA:   3'- gcCGGUugUUCUG---CUGCGUCu---UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 6236 0.72 0.467943
Target:  5'- uCGGgCAGCGcauuccAGGCGGCGCGGGucaguccgcuaucGGCGUa -3'
miRNA:   3'- -GCCgGUUGU------UCUGCUGCGUCU-------------UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 6287 0.67 0.73897
Target:  5'- uCGGCCuuCAuggcuucGACGGuCGCAGcAAGgGCu -3'
miRNA:   3'- -GCCGGuuGUu------CUGCU-GCGUC-UUCgCG- -5'
12374 3' -53.6 NC_003324.1 + 7552 0.74 0.382901
Target:  5'- gGGCCAGCAAGGCGcACGCcuccggaccagaGGGAGUu- -3'
miRNA:   3'- gCCGGUUGUUCUGC-UGCG------------UCUUCGcg -5'
12374 3' -53.6 NC_003324.1 + 8555 0.67 0.756741
Target:  5'- cCGGCCAccauCGGGGCGuagucucgauugacGCGCAu--GCGCg -3'
miRNA:   3'- -GCCGGUu---GUUCUGC--------------UGCGUcuuCGCG- -5'
12374 3' -53.6 NC_003324.1 + 9455 0.67 0.73897
Target:  5'- aCGGUCAAUAAuGGCGAUGCuGGAucGGCccGCu -3'
miRNA:   3'- -GCCGGUUGUU-CUGCUGCG-UCU--UCG--CG- -5'
12374 3' -53.6 NC_003324.1 + 9658 0.69 0.640993
Target:  5'- -cGCCAACGcgcuGGGCGGCGUGGGgccgGGCGg -3'
miRNA:   3'- gcCGGUUGU----UCUGCUGCGUCU----UCGCg -5'
12374 3' -53.6 NC_003324.1 + 10693 0.7 0.574786
Target:  5'- aCGGCCAGCGuuGGGCGAC-UGGggGaCGg -3'
miRNA:   3'- -GCCGGUUGU--UCUGCUGcGUCuuC-GCg -5'
12374 3' -53.6 NC_003324.1 + 11054 0.66 0.790124
Target:  5'- aGGCCGACAuaaACGACGguGccguuaacuGUGCc -3'
miRNA:   3'- gCCGGUUGUuc-UGCUGCguCuu-------CGCG- -5'
12374 3' -53.6 NC_003324.1 + 11161 0.69 0.674116
Target:  5'- gCGGCCGGCucGcACaGCGUuGAGGUGCg -3'
miRNA:   3'- -GCCGGUUGuuC-UGcUGCGuCUUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.