miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12374 3' -53.6 NC_003324.1 + 34556 1.13 0.000842
Target:  5'- cCGGCCAACAAGACGACGCAGAAGCGCg -3'
miRNA:   3'- -GCCGGUUGUUCUGCUGCGUCUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 55044 0.84 0.088089
Target:  5'- aGGCgGACGGcugggcugccgcGACGGCGCAGAAGCGUa -3'
miRNA:   3'- gCCGgUUGUU------------CUGCUGCGUCUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 1514 0.79 0.187656
Target:  5'- gGGCCAGCGAGGaucCGGCgGCAGuGGUGCg -3'
miRNA:   3'- gCCGGUUGUUCU---GCUG-CGUCuUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 21893 0.77 0.244833
Target:  5'- aGGCgGACGAcGGCGACGagaaagcacaGGAAGCGCu -3'
miRNA:   3'- gCCGgUUGUU-CUGCUGCg---------UCUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 35017 0.77 0.244833
Target:  5'- aGGgCGGCGcAGAUGAagaGCAGGAGCGCc -3'
miRNA:   3'- gCCgGUUGU-UCUGCUg--CGUCUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 37995 0.77 0.263928
Target:  5'- gCGGCCAugccggaGCGGuuGCGGCGCAcGggGCGCg -3'
miRNA:   3'- -GCCGGU-------UGUUc-UGCUGCGU-CuuCGCG- -5'
12374 3' -53.6 NC_003324.1 + 26331 0.76 0.285658
Target:  5'- aGGCgGACGAGGCGugGCAGAuGGUc- -3'
miRNA:   3'- gCCGgUUGUUCUGCugCGUCU-UCGcg -5'
12374 3' -53.6 NC_003324.1 + 28688 0.76 0.292963
Target:  5'- gGGCCAcgAGGGCGACagcggGCGGAAGcCGCg -3'
miRNA:   3'- gCCGGUugUUCUGCUG-----CGUCUUC-GCG- -5'
12374 3' -53.6 NC_003324.1 + 36695 0.75 0.315749
Target:  5'- cCGGaaCCAACAuucGAUGAUGCGGAuGCGCu -3'
miRNA:   3'- -GCC--GGUUGUu--CUGCUGCGUCUuCGCG- -5'
12374 3' -53.6 NC_003324.1 + 39027 0.75 0.347332
Target:  5'- aCGGCCAAggguCGAGACGGCGCcuacuacaacaugGucaugGAGGCGCu -3'
miRNA:   3'- -GCCGGUU----GUUCUGCUGCG-------------U-----CUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 36544 0.74 0.374005
Target:  5'- aGGUgAAUAGGGCGACGUAcauGCGCa -3'
miRNA:   3'- gCCGgUUGUUCUGCUGCGUcuuCGCG- -5'
12374 3' -53.6 NC_003324.1 + 7552 0.74 0.382901
Target:  5'- gGGCCAGCAAGGCGcACGCcuccggaccagaGGGAGUu- -3'
miRNA:   3'- gCCGGUUGUUCUGC-UGCG------------UCUUCGcg -5'
12374 3' -53.6 NC_003324.1 + 14319 0.74 0.383798
Target:  5'- aCGGCagugaagcacgucagAGCGAGGCaGCuGCAGAAGCGCg -3'
miRNA:   3'- -GCCGg--------------UUGUUCUGcUG-CGUCUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 14577 0.73 0.401109
Target:  5'- gCGGCCugccggcGCAAGcggccgGCGGCGCAGGcgguAGCGUg -3'
miRNA:   3'- -GCCGGu------UGUUC------UGCUGCGUCU----UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 26709 0.73 0.419858
Target:  5'- cCGGaCAGCuu-GCGACGCAGcaGGGCGCg -3'
miRNA:   3'- -GCCgGUUGuucUGCUGCGUC--UUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 6216 0.73 0.42943
Target:  5'- -aGCCAugAAGGCcgaGGCGCAGcagcAGCGCa -3'
miRNA:   3'- gcCGGUugUUCUG---CUGCGUCu---UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 15582 0.72 0.448952
Target:  5'- gGGCCGACAcggcAGAUGccaAgGCGGGAGCGa -3'
miRNA:   3'- gCCGGUUGU----UCUGC---UgCGUCUUCGCg -5'
12374 3' -53.6 NC_003324.1 + 29999 0.72 0.458894
Target:  5'- cCGGCCGguGCAcucuGGCGACGC-GAugcuGCGCc -3'
miRNA:   3'- -GCCGGU--UGUu---CUGCUGCGuCUu---CGCG- -5'
12374 3' -53.6 NC_003324.1 + 24289 0.72 0.458894
Target:  5'- gGGCaCGGCGgagcuuggcgaAGGCGuCGCGGAcGCGCa -3'
miRNA:   3'- gCCG-GUUGU-----------UCUGCuGCGUCUuCGCG- -5'
12374 3' -53.6 NC_003324.1 + 18598 0.72 0.458894
Target:  5'- gGGCCAucuGguGGGCGGCGUGGAAcauGUGCg -3'
miRNA:   3'- gCCGGU---UguUCUGCUGCGUCUU---CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.